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  5. GSVIVT01035145001

GSVIVT01035145001


Description : Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus


Gene families : OG0001418 (Archaeplastida) Phylogenetic Tree(s): OG0001418_tree ,
OG_05_0010935 (LandPlants) Phylogenetic Tree(s): OG_05_0010935_tree ,
OG_06_0010888 (SeedPlants) Phylogenetic Tree(s): OG_06_0010888_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01035145001
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00231470 evm_27.TU.AmTr_v1... Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus 0.04 Archaeplastida
Gb_13711 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.03 Archaeplastida
Gb_32192 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.03 Archaeplastida
Gb_32193 No alias Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus... 0.02 Archaeplastida
Gb_38779 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.03 Archaeplastida
LOC_Os02g07190.1 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.02 Archaeplastida
LOC_Os05g30010.1 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.03 Archaeplastida
Solyc01g066740.3.1 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 1032 1063
IPR001680 WD40_repeat 995 1020
No external refs found!