AMTR_s00045p00169620 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00045.202

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.KNOX transcription factor


Gene families : OG0000263 (Archaeplastida) Phylogenetic Tree(s): OG0000263_tree ,
OG_05_0000128 (LandPlants) Phylogenetic Tree(s): OG_05_0000128_tree ,
OG_06_0003089 (SeedPlants) Phylogenetic Tree(s): OG_06_0003089_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00045p00169620
Cluster HCCA: Cluster_240

Target Alias Description ECC score Gene Family Method Actions
AT1G70510 KNAT2, ATK1 KNOTTED-like from Arabidopsis thaliana 2 0.04 Archaeplastida
AT4G08150 BP, BP1, KNAT1 KNOTTED-like from Arabidopsis thaliana 0.03 Archaeplastida
AT4G32040 KNAT5 KNOTTED1-like homeobox gene 5 0.03 Archaeplastida
GSVIVT01004811001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01009273001 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
GSVIVT01013790001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
GSVIVT01019880001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01031241001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
GSVIVT01035921001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
Gb_10887 No alias transcription factor (KNOX) 0.02 Archaeplastida
LOC_Os01g19694.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
LOC_Os03g03164.2 No alias transcription factor (KNOX) 0.03 Archaeplastida
LOC_Os03g51690.2 No alias transcription factor (KNOX) 0.02 Archaeplastida
LOC_Os03g56140.1 No alias transcription factor (KNOX) 0.04 Archaeplastida
LOC_Os05g03884.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
LOC_Os06g43860.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
Pp3c6_1550V3.1 No alias KNOTTED1-like homeobox gene 3 0.02 Archaeplastida
Smo90744 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
Solyc01g100510.4.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
Solyc02g081120.4.1 No alias transcription factor (KNOX) 0.04 Archaeplastida
Solyc04g077210.3.1 No alias transcription factor (KNOX) 0.05 Archaeplastida
Solyc05g005090.4.1 No alias transcription factor (KNOX) 0.04 Archaeplastida
Solyc07g007120.3.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
Zm00001e005170_P001 No alias transcription factor (KNOX) 0.02 Archaeplastida
Zm00001e011538_P001 No alias transcription factor (KNOX) 0.03 Archaeplastida
Zm00001e017489_P001 No alias transcription factor (KNOX) 0.04 Archaeplastida
Zm00001e027562_P001 No alias transcription factor (KNOX) 0.06 Archaeplastida
Zm00001e032761_P001 No alias transcription factor (KNOX) 0.05 Archaeplastida
Zm00001e039044_P001 No alias transcription factor (KNOX) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0016668 oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0047134 protein-disulfide reductase activity IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR005539 ELK_dom 194 215
IPR005541 KNOX2 113 161
IPR008422 Homeobox_KN_domain 234 259
IPR005540 KNOX1 65 102
No external refs found!