GSVIVT01035204001

Description : RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor

Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0000516 (LandPlants) Phylogenetic Tree(s): OG_05_0000516_tree ,
OG_06_0000730 (SeedPlants) Phylogenetic Tree(s): OG_06_0000730_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01035204001
Cluster	HCCA: Cluster_123

Target	Alias	Description	ECC score	Gene Family Method
AT2G28350	ARF10	auxin response factor 10	0.02	Archaeplastida
GSVIVT01025691001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.04	Archaeplastida
Gb_31132	No alias	transcription factor (ARF)	0.03	Archaeplastida
Gb_39686	No alias	transcription factor (ARF)	0.04	Archaeplastida
LOC_Os06g46410.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os06g48950.1	No alias	transcription factor (ARF)	0.02	Archaeplastida
LOC_Os11g32110.1	No alias	transcription factor (ARF)	0.05	Archaeplastida
LOC_Os12g29520.1	No alias	transcription factor (ARF)	0.05	Archaeplastida
LOC_Os12g41950.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
MA_10432528g0010	No alias	transcription factor (ARF)	0.02	Archaeplastida
Mp1g12750.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Mp2g02890.1	No alias	Auxin response factor 19 OS=Oryza sativa subsp. japonica...	0.04	Archaeplastida
Pp3c13_4720V3.1	No alias	auxin response factor 6	0.02	Archaeplastida
Pp3c1_40270V3.1	No alias	auxin response factor 6	0.03	Archaeplastida
Solyc05g047460.3.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e003229_P002	No alias	transcription factor (ARF)	0.07	Archaeplastida
Zm00001e006577_P003	No alias	transcription factor (ARF)	0.06	Archaeplastida
Zm00001e006640_P002	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e014833_P002	No alias	transcription factor (ARF)	0.02	Archaeplastida
Zm00001e018126_P002	No alias	transcription factor (ARF)	0.06	Archaeplastida
Zm00001e028396_P001	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e030325_P003	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e032423_P002	No alias	transcription factor (ARF)	0.05	Archaeplastida
Zm00001e041866_P001	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e041910_P003	No alias	transcription factor (ARF)	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000159	protein phosphatase type 2A complex	IEP	Neighborhood
BP	GO:0002097	tRNA wobble base modification	IEP	Neighborhood
BP	GO:0002098	tRNA wobble uridine modification	IEP	Neighborhood
MF	GO:0003779	actin binding	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Neighborhood
BP	GO:0006400	tRNA modification	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006497	protein lipidation	IEP	Neighborhood
BP	GO:0006505	GPI anchor metabolic process	IEP	Neighborhood
BP	GO:0006506	GPI anchor biosynthetic process	IEP	Neighborhood
BP	GO:0006643	membrane lipid metabolic process	IEP	Neighborhood
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	Neighborhood
BP	GO:0006664	glycolipid metabolic process	IEP	Neighborhood
BP	GO:0007010	cytoskeleton organization	IEP	Neighborhood
MF	GO:0008092	cytoskeletal protein binding	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	Neighborhood
BP	GO:0009247	glycolipid biosynthetic process	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016787	hydrolase activity	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0016887	ATPase activity	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
MF	GO:0019208	phosphatase regulator activity	IEP	Neighborhood
MF	GO:0019888	protein phosphatase regulator activity	IEP	Neighborhood
CC	GO:0033588	Elongator holoenzyme complex	IEP	Neighborhood
MF	GO:0033926	glycopeptide alpha-N-acetylgalactosaminidase activity	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0045017	glycerolipid biosynthetic process	IEP	Neighborhood
BP	GO:0046467	membrane lipid biosynthetic process	IEP	Neighborhood
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	Neighborhood
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	Neighborhood
CC	GO:1903293	phosphatase complex	IEP	Neighborhood
BP	GO:1903509	liposaccharide metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	128	230
IPR010525	Auxin_resp	255	338

External Links

No external refs found!

GSVIVT01035204001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation