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  5. GSVIVT01035374001

GSVIVT01035374001


Description : Protein biosynthesis.translation initiation.mRNA loading.eIF4A mRNA unwinding factor


Gene families : OG0000822 (Archaeplastida) Phylogenetic Tree(s): OG0000822_tree ,
OG_05_0001711 (LandPlants) Phylogenetic Tree(s): OG_05_0001711_tree ,
OG_06_0001736 (SeedPlants) Phylogenetic Tree(s): OG_06_0001736_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01035374001
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
MA_10436040g0020 No alias helicase component eIF4A3 of RNA quality control Exon... 0.03 Archaeplastida
Mp2g02760.1 No alias mRNA unwinding factor (eIF4A) 0.04 Archaeplastida
Pp3c6_1080V3.1 No alias eukaryotic translation initiation factor 4A1 0.03 Archaeplastida
Pp3c7_3770V3.1 No alias eukaryotic translation initiation factor 4A1 0.04 Archaeplastida
Pp3s93_30V3.1 No alias eukaryotic translation initiation factor 4A1 0.04 Archaeplastida
Solyc08g062800.3.1 No alias mRNA unwinding factor (eIF4A) 0.03 Archaeplastida
Solyc11g033280.2.1 No alias helicase component eIF4A3 of RNA quality control Exon... 0.03 Archaeplastida
Zm00001e016284_P001 No alias helicase component eIF4A3 of RNA quality control Exon... 0.04 Archaeplastida
Zm00001e030233_P004 No alias mRNA unwinding factor (eIF4A) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007051 spindle organization IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030688 preribosome, small subunit precursor IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0051225 spindle assembly IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
CC GO:0070652 HAUS complex IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 65 226
IPR001650 Helicase_C 266 374
No external refs found!