GSVIVT01035666001


Description : La protein 1 OS=Arabidopsis thaliana


Gene families : OG0002686 (Archaeplastida) Phylogenetic Tree(s): OG0002686_tree ,
OG_05_0002630 (LandPlants) Phylogenetic Tree(s): OG_05_0002630_tree ,
OG_06_0002427 (SeedPlants) Phylogenetic Tree(s): OG_06_0002427_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01035666001
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00056900 evm_27.TU.AmTr_v1... La protein 1 OS=Arabidopsis thaliana 0.07 Archaeplastida
AT4G32720 AtLa1, La1 La protein 1 0.06 Archaeplastida
GSVIVT01035689001 No alias La protein 1 OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os02g39700.1 No alias RNA chaperone (LA). rRNA chaperone (IRP2) 0.03 Archaeplastida
MA_697179g0010 No alias RNA chaperone (LA). rRNA chaperone (IRP2) 0.04 Archaeplastida
MA_78251g0010 No alias La protein 1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Mp1g04820.1 No alias RNA chaperone (LA). rRNA chaperone (IRP2) 0.06 Archaeplastida
Pp3c21_14880V3.1 No alias La protein 1 0.02 Archaeplastida
Solyc08g068310.3.1 No alias RNA chaperone (LA). rRNA chaperone (IRP2) 0.05 Archaeplastida
Zm00001e015074_P001 No alias RNA chaperone (LA). rRNA chaperone (IRP2) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Neighborhood
MF GO:0004576 oligosaccharyl transferase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030688 preribosome, small subunit precursor IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 123 177
IPR014886 La_RRM 267 359
IPR006630 La_HTH 14 84
No external refs found!