GSVIVT01035718001


Description : Cell cycle.regulation.cyclins.CYCA-type cyclin


Gene families : OG0000635 (Archaeplastida) Phylogenetic Tree(s): OG0000635_tree ,
OG_05_0000438 (LandPlants) Phylogenetic Tree(s): OG_05_0000438_tree ,
OG_06_0000371 (SeedPlants) Phylogenetic Tree(s): OG_06_0000371_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01035718001
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272790 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclins.CYCA-type cyclin 0.12 Archaeplastida
AMTR_s00068p00198800 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.11 Archaeplastida
AT1G44110 CYCA1;1 Cyclin A1;1 0.07 Archaeplastida
AT1G47210 CYCA3;2 cyclin-dependent protein kinase 3;2 0.04 Archaeplastida
AT1G80370 CYCA2;4 Cyclin A2;4 0.04 Archaeplastida
AT5G43080 CYCA3;1 Cyclin A3;1 0.11 Archaeplastida
Cpa|evm.model.tig00000076.67 No alias Cyclin-A2-1 OS=Oryza sativa subsp. japonica 0.04 Archaeplastida
Cre03.g207900 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.05 Archaeplastida
Gb_03779 No alias cyclin (CYCA) 0.08 Archaeplastida
Gb_07594 No alias cyclin (CYCA) 0.08 Archaeplastida
Gb_10619 No alias cyclin (CYCA) 0.04 Archaeplastida
Gb_21011 No alias cyclin (CYCA) 0.09 Archaeplastida
LOC_Os01g13260.1 No alias cyclin (CYCA) 0.06 Archaeplastida
LOC_Os03g41100.1 No alias cyclin (CYCA) 0.09 Archaeplastida
LOC_Os12g31810.1 No alias cyclin (CYCA) 0.09 Archaeplastida
LOC_Os12g39210.1 No alias cyclin (CYCA) 0.12 Archaeplastida
MA_103138g0010 No alias cyclin (CYCA) 0.05 Archaeplastida
MA_28323g0010 No alias cyclin (CYCA) 0.09 Archaeplastida
MA_6619g0010 No alias cyclin (CYCA) 0.07 Archaeplastida
MA_88982g0010 No alias cyclin (CYCA) 0.06 Archaeplastida
Mp2g25500.1 No alias cyclin (CYCA) 0.06 Archaeplastida
Pp3c1_38770V3.1 No alias Cyclin A1;1 0.03 Archaeplastida
Pp3c2_8700V3.1 No alias Cyclin A1;1 0.05 Archaeplastida
Pp3c2_8770V3.1 No alias Cyclin A1;1 0.03 Archaeplastida
Pp3c2_9020V3.1 No alias Cyclin A1;1 0.06 Archaeplastida
Smo97411 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.02 Archaeplastida
Solyc03g120440.3.1 No alias cyclin (CYCA) 0.06 Archaeplastida
Solyc04g078310.3.1 No alias cyclin (CYCA) 0.09 Archaeplastida
Solyc06g065680.3.1 No alias cyclin (CYCA) 0.04 Archaeplastida
Solyc12g088470.3.1 No alias cyclin (CYCA) 0.08 Archaeplastida
Solyc12g088500.2.1 No alias cyclin (CYCA) 0.11 Archaeplastida
Solyc12g088520.2.1 No alias cyclin (CYCA) 0.12 Archaeplastida
Zm00001e003049_P002 No alias cyclin (CYCA) 0.03 Archaeplastida
Zm00001e005138_P001 No alias cyclin (CYCA) 0.05 Archaeplastida
Zm00001e012454_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e013250_P002 No alias cyclin (CYCA) 0.03 Archaeplastida
Zm00001e017335_P001 No alias cyclin (CYCA) 0.06 Archaeplastida
Zm00001e026125_P002 No alias cyclin (CYCA) 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051301 cell division IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 269 391
IPR006671 Cyclin_N 140 267
No external refs found!