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Description : Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin establishment.PDS5 cohesin cofactor
Gene families : OG0000410 (Archaeplastida) Phylogenetic Tree(s): OG0000410_tree ,
OG_05_0001049 (LandPlants) Phylogenetic Tree(s): OG_05_0001049_tree ,
OG_06_0000558 (SeedPlants) Phylogenetic Tree(s): OG_06_0000558_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01035890001 | |
| Cluster | HCCA: Cluster_233 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00017p00192140 | evm_27.TU.AmTr_v1... | Cell cycle.mitosis and meiosis.sister chromatid... | 0.04 | Archaeplastida | |
| AMTR_s00061p00213120 | evm_27.TU.AmTr_v1... | Cell cycle.mitosis and meiosis.sister chromatid... | 0.04 | Archaeplastida | |
| AMTR_s00065p00174980 | evm_27.TU.AmTr_v1... | Cell cycle.mitosis and meiosis.sister chromatid... | 0.09 | Archaeplastida | |
| AT1G77600 | No alias | ARM repeat superfamily protein | 0.05 | Archaeplastida | |
| AT1G80810 | No alias | Tudor/PWWP/MBT superfamily protein | 0.02 | Archaeplastida | |
| AT4G31880 | No alias | LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant... | 0.07 | Archaeplastida | |
| AT5G47690 | No alias | binding | 0.08 | Archaeplastida | |
| GSVIVT01008876001 | No alias | Cell cycle.mitosis and meiosis.sister chromatid... | 0.04 | Archaeplastida | |
| Gb_02487 | No alias | cohesin cofactor (PDS5) | 0.04 | Archaeplastida | |
| Gb_09525 | No alias | cohesin cofactor (PDS5) | 0.05 | Archaeplastida | |
| Gb_23673 | No alias | cohesin cofactor (PDS5) | 0.08 | Archaeplastida | |
| LOC_Os06g17840.1 | No alias | cohesin cofactor (PDS5) | 0.04 | Archaeplastida | |
| MA_10093130g0010 | No alias | no hits & (original description: none) | 0.04 | Archaeplastida | |
| MA_10127984g0010 | No alias | no hits & (original description: none) | 0.01 | Archaeplastida | |
| MA_10426926g0010 | No alias | cohesin cofactor (PDS5) | 0.03 | Archaeplastida | |
| MA_10433886g0010 | No alias | cohesin cofactor (PDS5) | 0.04 | Archaeplastida | |
| MA_10434055g0010 | No alias | cohesin cofactor (PDS5) | 0.03 | Archaeplastida | |
| MA_10434304g0010 | No alias | cohesin cofactor (PDS5) | 0.05 | Archaeplastida | |
| MA_214607g0010 | No alias | cohesin cofactor (PDS5) | 0.03 | Archaeplastida | |
| MA_25261g0010 | No alias | no hits & (original description: none) | 0.05 | Archaeplastida | |
| Pp3c10_24900V3.1 | No alias | binding | 0.07 | Archaeplastida | |
| Pp3c20_23000V3.1 | No alias | binding | 0.05 | Archaeplastida | |
| Pp3c23_10270V3.1 | No alias | binding | 0.06 | Archaeplastida | |
| Solyc03g117010.4.1 | No alias | cohesin cofactor (PDS5) | 0.03 | Archaeplastida | |
| Solyc06g065710.3.1 | No alias | cohesin cofactor (PDS5) | 0.07 | Archaeplastida | |
| Solyc11g012770.2.1 | No alias | cohesin cofactor (PDS5) | 0.07 | Archaeplastida | |
| Zm00001e007658_P001 | No alias | cohesin cofactor (PDS5) | 0.02 | Archaeplastida | |
| Zm00001e015094_P002 | No alias | cohesin cofactor (PDS5) | 0.06 | Archaeplastida | |
| Zm00001e019139_P001 | No alias | cohesin cofactor (PDS5) | 0.02 | Archaeplastida | |
| Zm00001e022962_P003 | No alias | cohesin cofactor (PDS5) | 0.04 | Archaeplastida | |
| Zm00001e030989_P001 | No alias | cohesin cofactor (PDS5) | 0.04 | Archaeplastida | |
| Zm00001e036853_P003 | No alias | cohesin cofactor (PDS5) | 0.09 | Archaeplastida | |
| Zm00001e041168_P001 | No alias | cohesin cofactor (PDS5) | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| CC | GO:0005634 | nucleus | IEP | Neighborhood |
| CC | GO:0005669 | transcription factor TFIID complex | IEP | Neighborhood |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Neighborhood |
| BP | GO:0006508 | proteolysis | IEP | Neighborhood |
| BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | Neighborhood |
| BP | GO:0006605 | protein targeting | IEP | Neighborhood |
| BP | GO:0006612 | protein targeting to membrane | IEP | Neighborhood |
| BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | Neighborhood |
| BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | Neighborhood |
| BP | GO:0006886 | intracellular protein transport | IEP | Neighborhood |
| MF | GO:0008312 | 7S RNA binding | IEP | Neighborhood |
| BP | GO:0009057 | macromolecule catabolic process | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Neighborhood |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Neighborhood |
| MF | GO:0019899 | enzyme binding | IEP | Neighborhood |
| BP | GO:0019941 | modification-dependent protein catabolic process | IEP | Neighborhood |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
| CC | GO:0030684 | preribosome | IEP | Neighborhood |
| MF | GO:0031625 | ubiquitin protein ligase binding | IEP | Neighborhood |
| CC | GO:0032040 | small-subunit processome | IEP | Neighborhood |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Neighborhood |
| BP | GO:0033365 | protein localization to organelle | IEP | Neighborhood |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Neighborhood |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
| BP | GO:0042254 | ribosome biogenesis | IEP | Neighborhood |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | Neighborhood |
| BP | GO:0044085 | cellular component biogenesis | IEP | Neighborhood |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | Neighborhood |
| MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | Neighborhood |
| CC | GO:0044798 | nuclear transcription factor complex | IEP | Neighborhood |
| BP | GO:0045047 | protein targeting to ER | IEP | Neighborhood |
| BP | GO:0046907 | intracellular transport | IEP | Neighborhood |
| CC | GO:0048500 | signal recognition particle | IEP | Neighborhood |
| BP | GO:0051603 | proteolysis involved in cellular protein catabolic process | IEP | Neighborhood |
| BP | GO:0051641 | cellular localization | IEP | Neighborhood |
| BP | GO:0051649 | establishment of localization in cell | IEP | Neighborhood |
| BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | Neighborhood |
| BP | GO:0072594 | establishment of protein localization to organelle | IEP | Neighborhood |
| BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | Neighborhood |
| BP | GO:0072657 | protein localization to membrane | IEP | Neighborhood |
| BP | GO:0090150 | establishment of protein localization to membrane | IEP | Neighborhood |
| CC | GO:0090575 | RNA polymerase II transcription factor complex | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Neighborhood |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |