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  5. GSVIVT01035920001

GSVIVT01035920001


Description : Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0011427 (LandPlants) Phylogenetic Tree(s): OG_05_0011427_tree ,
OG_06_0011525 (SeedPlants) Phylogenetic Tree(s): OG_06_0011525_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01035920001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00263110 No alias Pentatricopeptide repeat-containing protein At1g03540... 0.03 Archaeplastida
AMTR_s00004p00087070 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
AMTR_s00010p00220510 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00011p00266560 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
AMTR_s00012p00252800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.02 Archaeplastida
AMTR_s00014p00068600 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g43980,... 0.02 Archaeplastida
AMTR_s00024p00225420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
AMTR_s00025p00155620 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
AMTR_s00029p00235510 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.11 Archaeplastida
AMTR_s00038p00071780 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g26540... 0.02 Archaeplastida
AMTR_s00039p00132380 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
AMTR_s00039p00210570 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
AMTR_s00049p00210350 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AMTR_s00049p00223290 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00061p00127300 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
AMTR_s00062p00213230 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 Archaeplastida
AMTR_s00063p00172440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
AMTR_s00071p00184210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
AMTR_s00103p00160020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
AMTR_s00129p00082590 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g19720... 0.03 Archaeplastida
AMTR_s00130p00019530 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
AMTR_s02193p00008230 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g02330,... 0.02 Archaeplastida
AT1G03540 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Archaeplastida
AT1G14470 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Archaeplastida
AT1G17630 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.05 Archaeplastida
AT1G56570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT1G68930 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Archaeplastida
AT2G01510 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
AT2G20540 MEF21 mitochondrial editing factor 21 0.05 Archaeplastida
AT3G03580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G05240 MEF19 mitochondrial editing factor 19 0.06 Archaeplastida
AT3G05340 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
AT3G18970 MEF20 mitochondrial editing factor 20 0.04 Archaeplastida
AT3G21470 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Archaeplastida
AT3G22690 No alias CONTAINS InterPro DOMAIN/s: Protein of unknown function... 0.03 Archaeplastida
AT3G23330 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT3G25970 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT3G26782 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT3G49170 EMB2261 Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT4G14170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Archaeplastida
AT4G33170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.14 Archaeplastida
AT4G35130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT4G39530 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
AT5G08305 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT5G08490 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
AT5G39680 EMB2744 Pentatricopeptide repeat (PPR) superfamily protein 0.11 Archaeplastida
AT5G47460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.08 Archaeplastida
GSVIVT01003453001 No alias RNA processing.organelle machineries.RNA... 0.25 Archaeplastida
GSVIVT01003804001 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.05 Archaeplastida
GSVIVT01015521001 No alias Pentatricopeptide repeat-containing protein At4g32430,... 0.08 Archaeplastida
GSVIVT01017075001 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.12 Archaeplastida
GSVIVT01026181001 No alias Pentatricopeptide repeat-containing protein At5g08305... 0.03 Archaeplastida
GSVIVT01027196001 No alias Pentatricopeptide repeat-containing protein At5g08510... 0.04 Archaeplastida
GSVIVT01028697001 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.2 Archaeplastida
GSVIVT01028819001 No alias Pentatricopeptide repeat-containing protein At5g52850,... 0.08 Archaeplastida
GSVIVT01030248001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01031733001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.04 Archaeplastida
GSVIVT01035837001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.09 Archaeplastida
Gb_08518 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Gb_19040 No alias Putative pentatricopeptide repeat-containing protein... 0.14 Archaeplastida
Gb_25046 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_25869 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.02 Archaeplastida
Gb_32256 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.04 Archaeplastida
LOC_Os01g60000.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.04 Archaeplastida
LOC_Os02g06880.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.11 Archaeplastida
LOC_Os02g07050.1 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.06 Archaeplastida
LOC_Os02g40750.1 No alias Pentatricopeptide repeat-containing protein At1g33350... 0.01 Archaeplastida
LOC_Os04g35650.1 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.08 Archaeplastida
LOC_Os04g53630.1 No alias Pentatricopeptide repeat-containing protein At3g20730... 0.03 Archaeplastida
LOC_Os05g49740.1 No alias Pentatricopeptide repeat-containing protein At5g39680... 0.06 Archaeplastida
LOC_Os06g20870.1 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 Archaeplastida
LOC_Os11g01860.1 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
LOC_Os11g45410.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
LOC_Os12g01850.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_10429043g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_10429069g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
MA_106123g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_11765g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_117676g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_130735g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_136326g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_138190g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_14938g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_183278g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
MA_19816g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
MA_22485g0010 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.01 Archaeplastida
MA_2473g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
MA_24849g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_25584g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
MA_265921g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_286190g0010 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.02 Archaeplastida
MA_305950g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_34492g0020 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_39595g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_412g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
MA_41676g0020 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.06 Archaeplastida
MA_445076g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
MA_57048g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 Archaeplastida
MA_656915g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
MA_724726g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_75255g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
MA_7691g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
MA_778985g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
MA_794605g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_805687g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_812716g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_81436g0010 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.02 Archaeplastida
MA_86894g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
MA_9354530g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
MA_958908g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
MA_961981g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Smo102603 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.01 Archaeplastida
Solyc01g006920.4.1 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.04 Archaeplastida
Solyc01g090510.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc01g091610.1.1 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.11 Archaeplastida
Solyc02g005280.1.1 No alias Pentatricopeptide repeat-containing protein At1g50270... 0.06 Archaeplastida
Solyc02g065030.1.1 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Solyc02g065410.3.1 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.09 Archaeplastida
Solyc03g063690.1.1 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
Solyc03g093630.3.1 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Solyc03g097850.1.1 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.03 Archaeplastida
Solyc03g098420.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Solyc03g115790.1.1 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.07 Archaeplastida
Solyc03g116000.1.1 No alias Pentatricopeptide repeat-containing protein At3g47530... 0.04 Archaeplastida
Solyc03g120460.4.1 No alias No annotation 0.02 Archaeplastida
Solyc04g082870.1.1 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.06 Archaeplastida
Solyc05g012630.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Solyc06g062610.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Solyc06g066080.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.09 Archaeplastida
Solyc06g069700.4.1 No alias Pentatricopeptide repeat-containing protein At5g61400... 0.03 Archaeplastida
Solyc06g082880.2.1 No alias RNA editing factor (MEF13) 0.04 Archaeplastida
Solyc06g084580.1.1 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.03 Archaeplastida
Solyc07g006990.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.09 Archaeplastida
Solyc07g009220.2.1 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.11 Archaeplastida
Solyc07g042760.1.1 No alias Pentatricopeptide repeat-containing protein At4g31070,... 0.04 Archaeplastida
Solyc07g055310.1.1 No alias Pentatricopeptide repeat-containing protein At2g41080... 0.02 Archaeplastida
Solyc08g014100.1.1 No alias Pentatricopeptide repeat-containing protein At5g43790... 0.03 Archaeplastida
Solyc08g023640.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Solyc08g078570.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
Solyc09g010070.1.1 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.12 Archaeplastida
Solyc09g065710.1.1 No alias RNA editing factor (OTP86) 0.04 Archaeplastida
Solyc09g075170.1.1 No alias Pentatricopeptide repeat-containing protein At3g62890... 0.06 Archaeplastida
Solyc09g082400.2.1 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.04 Archaeplastida
Solyc11g005960.1.1 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Archaeplastida
Solyc11g007230.1.1 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.06 Archaeplastida
Solyc11g008970.1.1 No alias Pentatricopeptide repeat-containing protein At4g39952,... 0.03 Archaeplastida
Solyc11g017290.1.1 No alias Pentatricopeptide repeat-containing protein At1g31430... 0.03 Archaeplastida
Solyc11g062250.2.1 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.03 Archaeplastida
Solyc11g067210.1.1 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Solyc12g099620.1.1 No alias Pentatricopeptide repeat-containing protein At4g32430,... 0.05 Archaeplastida
Zm00001e000335_P001 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
Zm00001e000523_P001 No alias Pentatricopeptide repeat-containing protein At5g15300... 0.11 Archaeplastida
Zm00001e005246_P001 No alias Pentatricopeptide repeat-containing protein At2g41080... 0.08 Archaeplastida
Zm00001e007597_P001 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 Archaeplastida
Zm00001e007600_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.17 Archaeplastida
Zm00001e008200_P001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.11 Archaeplastida
Zm00001e010837_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.06 Archaeplastida
Zm00001e011748_P001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.04 Archaeplastida
Zm00001e012607_P002 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Zm00001e013531_P001 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.1 Archaeplastida
Zm00001e014800_P001 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.04 Archaeplastida
Zm00001e018565_P001 No alias Pentatricopeptide repeat-containing protein At3g13880... 0.1 Archaeplastida
Zm00001e018597_P001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
Zm00001e019482_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.07 Archaeplastida
Zm00001e027978_P001 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
Zm00001e030553_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e030831_P001 No alias Pentatricopeptide repeat-containing protein At3g20730... 0.04 Archaeplastida
Zm00001e033310_P001 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.04 Archaeplastida
Zm00001e035616_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e035764_P001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.06 Archaeplastida
Zm00001e036647_P001 No alias Pentatricopeptide repeat-containing protein At5g08510... 0.09 Archaeplastida
Zm00001e037600_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.09 Archaeplastida
Zm00001e038629_P001 No alias no hits & (original description: none) 0.08 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006282 regulation of DNA repair IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0080134 regulation of response to stress IEP Neighborhood
BP GO:0080135 regulation of cellular response to stress IEP Neighborhood
BP GO:2001020 regulation of response to DNA damage stimulus IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 126 151
IPR002885 Pentatricopeptide_repeat 52 99
No external refs found!