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  5. GSVIVT01036085001

GSVIVT01036085001


Description : Casparian strip membrane protein 2 OS=Vitis vinifera


Gene families : OG0000389 (Archaeplastida) Phylogenetic Tree(s): OG0000389_tree ,
OG_05_0000192 (LandPlants) Phylogenetic Tree(s): OG_05_0000192_tree ,
OG_06_0001302 (SeedPlants) Phylogenetic Tree(s): OG_06_0001302_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01036085001
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00176090 evm_27.TU.AmTr_v1... CASP-like protein 1F1 OS=Ricinus communis 0.03 Archaeplastida
AMTR_s00016p00178190 evm_27.TU.AmTr_v1... CASP-like protein 1F1 OS=Vitis vinifera 0.04 Archaeplastida
AMTR_s00040p00135930 evm_27.TU.AmTr_v1... Casparian strip membrane protein 2 OS=Vitis vinifera 0.03 Archaeplastida
AT1G14160 No alias Uncharacterised protein family (UPF0497) 0.03 Archaeplastida
AT3G06390 No alias Uncharacterised protein family (UPF0497) 0.03 Archaeplastida
AT4G20390 No alias Uncharacterised protein family (UPF0497) 0.03 Archaeplastida
AT5G44550 No alias Uncharacterised protein family (UPF0497) 0.03 Archaeplastida
GSVIVT01008618001 No alias CASP-like protein 1F1 OS=Vitis vinifera 0.04 Archaeplastida
GSVIVT01037957001 No alias CASP-like protein 1B2 OS=Vitis vinifera 0.04 Archaeplastida
Gb_26811 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_26813 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.03 Archaeplastida
LOC_Os02g51010.1 No alias Casparian strip membrane protein 4 OS=Oryza sativa... 0.03 Archaeplastida
LOC_Os12g41690.1 No alias CASP-like protein 1B1 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_5227376g0010 No alias Casparian strip membrane protein 1 OS=Picea glauca... 0.03 Archaeplastida
MA_94788g0010 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.03 Archaeplastida
Pp3c10_17030V3.1 No alias Uncharacterised protein family (UPF0497) 0.04 Archaeplastida
Pp3c14_2270V3.1 No alias Uncharacterised protein family (UPF0497) 0.04 Archaeplastida
Solyc01g067330.3.1 No alias CASP-like protein 1E1 OS=Glycine max... 0.04 Archaeplastida
Solyc03g097730.2.1 No alias CASP-like protein 1F1 OS=Ricinus communis... 0.03 Archaeplastida
Solyc04g005620.3.1 No alias Casparian strip membrane protein 2 OS=Solanum demissum... 0.04 Archaeplastida
Solyc06g074230.3.1 No alias Casparian strip membrane protein 2 OS=Triphysaria... 0.04 Archaeplastida
Solyc09g010200.4.1 No alias Casparian strip membrane protein 1 OS=Nicotiana tabacum... 0.02 Archaeplastida
Solyc10g083250.2.1 No alias Casparian strip membrane protein 1 OS=Nicotiana tabacum... 0.04 Archaeplastida
Zm00001e006491_P001 No alias Casparian strip membrane protein 2 OS=Zea mays... 0.02 Archaeplastida
Zm00001e015806_P001 No alias Casparian strip membrane protein 3 OS=Sorghum bicolor... 0.03 Archaeplastida
Zm00001e024279_P001 No alias Casparian strip membrane protein 2 OS=Sorghum bicolor... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
BP GO:0006188 IMP biosynthetic process IEP Neighborhood
BP GO:0006189 'de novo' IMP biosynthetic process IEP Neighborhood
MF GO:0008519 ammonium transmembrane transporter activity IEP Neighborhood
BP GO:0015696 ammonium transport IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0046040 IMP metabolic process IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
InterPro domains Description Start Stop
IPR006702 CASP_dom 38 186
No external refs found!