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  5. AMTR_s00045p00207750

AMTR_s00045p00207750 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00045.280

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS19 component


Gene families : OG0002393 (Archaeplastida) Phylogenetic Tree(s): OG0002393_tree ,
OG_05_0002411 (LandPlants) Phylogenetic Tree(s): OG_05_0002411_tree ,
OG_06_0002523 (SeedPlants) Phylogenetic Tree(s): OG_06_0002523_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00045p00207750
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AT3G02080 No alias Ribosomal protein S19e family protein 0.19 Archaeplastida
AT5G15520 No alias Ribosomal protein S19e family protein 0.16 Archaeplastida
AT5G61170 No alias Ribosomal protein S19e family protein 0.3 Archaeplastida
Cpa|evm.model.tig00021017.6 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 Archaeplastida
Cre02.g106600 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.35 Archaeplastida
GSVIVT01007908001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.21 Archaeplastida
GSVIVT01012199001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.28 Archaeplastida
Gb_40460 No alias component RPS19 of SSU proteome 0.13 Archaeplastida
LOC_Os03g31090.1 No alias component RPS19 of SSU proteome 0.28 Archaeplastida
MA_10427917g0010 No alias component RPS19 of SSU proteome 0.24 Archaeplastida
MA_9301411g0010 No alias component RPS19 of SSU proteome 0.15 Archaeplastida
Mp1g27380.1 No alias component RPS19 of SSU proteome 0.29 Archaeplastida
Pp3c14_19640V3.1 No alias Ribosomal protein S19e family protein 0.24 Archaeplastida
Pp3c17_15200V3.1 No alias Ribosomal protein S19e family protein 0.17 Archaeplastida
Pp3c1_28780V3.1 No alias Ribosomal protein S19e family protein 0.23 Archaeplastida
Pp3c27_2780V3.1 No alias Ribosomal protein S19e family protein 0.05 Archaeplastida
Pp3c2_10060V3.1 No alias Ribosomal protein S19e family protein 0.24 Archaeplastida
Smo153225 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.22 Archaeplastida
Solyc03g115360.3.1 No alias component RPS19 of SSU proteome 0.23 Archaeplastida
Solyc12g039120.2.1 No alias component RPS19 of SSU proteome 0.24 Archaeplastida
Zm00001e002011_P001 No alias component RPS19 of SSU proteome 0.25 Archaeplastida
Zm00001e038053_P003 No alias component RPS19 of SSU proteome 0.27 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003954 NADH dehydrogenase activity IEP Neighborhood
MF GO:0004129 cytochrome-c oxidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0004576 oligosaccharyl transferase activity IEP Neighborhood
MF GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Neighborhood
CC GO:0008250 oligosaccharyltransferase complex IEP Neighborhood
MF GO:0015002 heme-copper terminal oxidase activity IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Neighborhood
BP GO:0015986 ATP synthesis coupled proton transport IEP Neighborhood
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Neighborhood
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Neighborhood
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001266 Ribosomal_S19e 5 139
No external refs found!