GSVIVT01036253001

Description : Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana

Gene families : OG0004527 (Archaeplastida) Phylogenetic Tree(s): OG0004527_tree ,
OG_05_0003301 (LandPlants) Phylogenetic Tree(s): OG_05_0003301_tree ,
OG_06_0005607 (SeedPlants) Phylogenetic Tree(s): OG_06_0005607_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01036253001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00061p00170900	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At5g64320,...	0.03	Archaeplastida
AMTR_s00061p00171020	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g63130,...	0.01	Archaeplastida
AMTR_s00061p00171060	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At5g64320,...	0.01	Archaeplastida
AMTR_s00140p00073970	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At5g39710...	0.04	Archaeplastida
Smo121322	No alias	Pentatricopeptide repeat-containing protein At1g06710,...	0.07	Archaeplastida
Smo165305	No alias	Putative pentatricopeptide repeat-containing protein...	0.01	Archaeplastida
Smo99426	No alias	Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	78	104
IPR002885	Pentatricopeptide_repeat	186	229
IPR002885	Pentatricopeptide_repeat	8	56
IPR002885	Pentatricopeptide_repeat	113	162

External Links

No external refs found!