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  5. GSVIVT01036393001

GSVIVT01036393001


Description : Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01036393001
Cluster HCCA: Cluster_222

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00266930 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
AMTR_s00022p00075660 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 Archaeplastida
AMTR_s00056p00185560 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
AMTR_s00129p00082590 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g19720... 0.03 Archaeplastida
AT1G03540 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Archaeplastida
AT1G06140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT1G17630 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Archaeplastida
AT1G20230 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT2G04860 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT2G20540 MEF21 mitochondrial editing factor 21 0.03 Archaeplastida
AT2G33680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT2G41080 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G03580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G08820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT3G09040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT3G13770 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT3G15130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G21470 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Archaeplastida
AT3G26540 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G46790 CRR2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT4G21300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT4G33170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT5G08305 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT5G39680 EMB2744 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G46460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G65570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
GSVIVT01021774001 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.03 Archaeplastida
GSVIVT01024493001 No alias Pentatricopeptide repeat-containing protein At4g39952,... 0.03 Archaeplastida
GSVIVT01029885001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01033872001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
GSVIVT01035837001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Gb_07442 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
Gb_14617 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
Gb_32256 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.02 Archaeplastida
Gb_38068 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
LOC_Os01g40720.1 No alias RNA editing factor (MEF7) 0.04 Archaeplastida
LOC_Os02g09800.1 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.02 Archaeplastida
LOC_Os03g64370.1 No alias Pentatricopeptide repeat-containing protein At5g52850,... 0.02 Archaeplastida
LOC_Os04g14450.1 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.03 Archaeplastida
LOC_Os05g24150.1 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.04 Archaeplastida
LOC_Os05g38190.2 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
LOC_Os06g49185.1 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 Archaeplastida
LOC_Os07g19400.1 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.04 Archaeplastida
LOC_Os07g20420.1 No alias Pentatricopeptide repeat-containing protein At3g26782,... 0.02 Archaeplastida
MA_1109g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
MA_112594g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_116442g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
MA_14381g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_14938g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_16339g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_1673g0010 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.03 Archaeplastida
MA_175688g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_19816g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_210823g0010 No alias Pentatricopeptide repeat-containing protein At4g37170... 0.03 Archaeplastida
MA_211508g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
MA_22485g0010 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.02 Archaeplastida
MA_2473g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_25584g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_25729g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.02 Archaeplastida
MA_27726g0010 No alias RNA editing factor (ECB2/VAC1) 0.02 Archaeplastida
MA_39801g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_70677g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_75255g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_7691g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_778985g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_7907g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_812716g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
MA_81436g0010 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.03 Archaeplastida
MA_8210920g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_8491g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_9258g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Pp3c14_16110V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Pp3c3_24770V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Smo100621 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Smo81625 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Smo99756 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.04 Archaeplastida
Solyc02g011680.4.1 No alias Pentatricopeptide repeat-containing protein At5g27110... 0.02 Archaeplastida
Solyc02g065030.1.1 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
Solyc02g082160.2.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Solyc03g063160.1.1 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Solyc03g098420.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Solyc04g016540.2.1 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.02 Archaeplastida
Solyc04g082870.1.1 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.03 Archaeplastida
Solyc07g008480.3.1 No alias Pentatricopeptide repeat-containing protein At3g14730... 0.03 Archaeplastida
Solyc09g007040.1.1 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.03 Archaeplastida
Solyc09g008300.2.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.02 Archaeplastida
Solyc09g090220.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Solyc10g054730.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e007600_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Zm00001e011923_P001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.03 Archaeplastida
Zm00001e014825_P001 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Zm00001e020567_P001 No alias RNA editing factor (MEF7) 0.03 Archaeplastida
Zm00001e020583_P001 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.04 Archaeplastida
Zm00001e030553_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e031396_P001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
Zm00001e041246_P001 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000278 mitotic cell cycle IEP Neighborhood
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0007049 cell cycle IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007064 mitotic sister chromatid cohesion IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
BP GO:0016482 cytosolic transport IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
CC GO:0030906 retromer, cargo-selective complex IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
BP GO:0042147 retrograde transport, endosome to Golgi IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 357 400
IPR002885 Pentatricopeptide_repeat 459 506
IPR002885 Pentatricopeptide_repeat 169 211
IPR002885 Pentatricopeptide_repeat 230 251
IPR002885 Pentatricopeptide_repeat 331 356
IPR002885 Pentatricopeptide_repeat 432 457
IPR002885 Pentatricopeptide_repeat 259 287
No external refs found!