GSVIVT01036581001


Description : RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TATA box-binding protein (TBP) regulation.NC2 regulator complex.alpha component


Gene families : OG0002760 (Archaeplastida) Phylogenetic Tree(s): OG0002760_tree ,
OG_05_0003031 (LandPlants) Phylogenetic Tree(s): OG_05_0003031_tree ,
OG_06_0002988 (SeedPlants) Phylogenetic Tree(s): OG_06_0002988_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01036581001
Cluster HCCA: Cluster_224

Target Alias Description ECC score Custom Heatmap </span>Gene Family Method</th> <th>Actions</th> </tr> </thead> <tbody> <tr> <td><a href="/sequence/view/319546" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/319546">LOC_Os11g34200.1</a></td> <td><span class="text-muted">No alias</span></td> <td>component alpha of TATA box-binding protein NC2 regulator complex</td> <td>0.04</td> <td>Archaeplastida</td> <td><a href="/ecc/graph_pair/3255731" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/404470/12/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> </tbody> </table> </div> <br> <h3 class="banner-blue" id="annotation">Functional Annotation</h3> <div class="panel with-nav-tabs panel-default"> <div class="panel-heading"> <ul class="nav nav-tabs"> <li class="active"><a href="#tab1default" data-toggle="tab">GO</a></li> <li><a href="#tab2default" data-toggle="tab">Predicted GO</a></li> <li><a href="#tab3default" data-toggle="tab">InterPro</a></li> </ul> </div> <div> <div class="tab-content"> <div class="tab-pane fade in active" id="tab1default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="go_table"> <thead> <tr> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th> <th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th> </tr> </thead> <tbody> <tr> <td class="col-xs-12"><p>No GO annotation available for this sequence</p></td> </tr> </tbody> </table> </div> <div class="panel-body"> <a href="#" id="go_toggle">Toggle parental</a> </div> </div> <div class="tab-pane fade" id="tab2default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="predicted_go_table"> <thead> <tr> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th> <th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th> </tr> </thead> <tbody> <tr style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/532" data-toggle="tooltip" data-placement="top" title=""A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures." [GOC:elh]">GO:0000786</a></td> <td class="col-xs-6">nucleosome</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/2741" data-toggle="tooltip" data-placement="top" title=""Interacting selectively and non-covalently with any nucleic acid." [GOC:jl]">GO:0003676</a></td> <td class="col-xs-6">nucleic acid binding</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/3366" data-toggle="tooltip" data-placement="top" title=""Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone." [EC:2.3.1.48]">GO:0004402</a></td> <td class="col-xs-6">histone acetyltransferase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/4226" data-toggle="tooltip" data-placement="top" title=""The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule." [GOC:ceb, GOC:mah, ISBN:0198506732]">GO:0005488</a></td> <td class="col-xs-6">binding</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/4982" data-toggle="tooltip" data-placement="top" title=""Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin." [GOC:mah, GOC:vw, PMID:20404130]">GO:0006325</a></td> <td class="col-xs-6">chromatin organization</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/4989" data-toggle="tooltip" data-placement="top" title=""The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA." [GOC:mah]">GO:0006334</a></td> <td class="col-xs-6">nucleosome assembly</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/5104" data-toggle="tooltip" data-placement="top" title=""The addition of an acetyl group to a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid." [GOC:ai]">GO:0006473</a></td> <td class="col-xs-6">protein acetylation</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/5106" data-toggle="tooltip" data-placement="top" title=""The addition of an acetyl group to a non-terminal amino acid in a protein." [GOC:mah]">GO:0006475</a></td> <td class="col-xs-6">internal protein amino acid acetylation</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/6225" data-toggle="tooltip" data-placement="top" title=""Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule." [GOC:ai]">GO:0008080</a></td> <td class="col-xs-6">N-acetyltransferase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/10106" data-toggle="tooltip" data-placement="top" title=""A process that results in the assembly, arrangement of constituent parts, or disassembly of a cellular component." [GOC:ai, GOC:jl, GOC:mah]">GO:0016043</a></td> <td class="col-xs-6">cellular component organization</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/10387" data-toggle="tooltip" data-placement="top" title=""Catalysis of the transfer of an acetyl group to an acceptor molecule." [GOC:ai]">GO:0016407</a></td> <td class="col-xs-6">acetyltransferase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/10390" data-toggle="tooltip" data-placement="top" title=""Catalysis of the transfer of an acyl group to a nitrogen atom on the acceptor molecule." [GOC:ai]">GO:0016410</a></td> <td class="col-xs-6">N-acyltransferase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/10523" data-toggle="tooltip" data-placement="top" title=""The alteration of DNA or protein in chromatin by the covalent addition or removal of chemical groups." [GOC:mah, GOC:vw]">GO:0016569</a></td> <td class="col-xs-6">covalent chromatin modification</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/10524" data-toggle="tooltip" data-placement="top" title=""The covalent alteration of one or more amino acid residues within a histone protein." [GOC:krc]">GO:0016570</a></td> <td class="col-xs-6">histone modification</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/10527" data-toggle="tooltip" data-placement="top" title=""The modification of a histone by the addition of an acetyl group." [GOC:ai]">GO:0016573</a></td> <td class="col-xs-6">histone acetylation</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/11253" data-toggle="tooltip" data-placement="top" title=""The alteration of an amino acid residue in a peptide." [GOC:mah]">GO:0018193</a></td> <td class="col-xs-6">peptidyl-amino acid modification</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/11265" data-toggle="tooltip" data-placement="top" title=""The modification of peptidyl-lysine." [GOC:go_curators]">GO:0018205</a></td> <td class="col-xs-6">peptidyl-lysine modification</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/11427" data-toggle="tooltip" data-placement="top" title=""The addition of an acetyl group to a non-terminal lysine residue in a protein." [GOC:mah]">GO:0018393</a></td> <td class="col-xs-6">internal peptidyl-lysine acetylation</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/11428" data-toggle="tooltip" data-placement="top" title=""The acetylation of peptidyl-lysine." [GOC:mah]">GO:0018394</a></td> <td class="col-xs-6">peptidyl-lysine acetylation</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/13485" data-toggle="tooltip" data-placement="top" title=""The aggregation, arrangement and bonding together of a cellular component." [GOC:isa_complete]">GO:0022607</a></td> <td class="col-xs-6">cellular component assembly</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/16438" data-toggle="tooltip" data-placement="top" title=""A macromolecular complex containing both protein and DNA molecules." [GOC:mah]">GO:0032993</a></td> <td class="col-xs-6">protein-DNA complex</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/17637" data-toggle="tooltip" data-placement="top" title=""Catalysis of the acetylation of an amino acid residue of a peptide or protein, according to the reaction: acetyl-CoA + peptide = CoA + N-acetylpeptide." [GOC:mah]">GO:0034212</a></td> <td class="col-xs-6">peptide N-acetyltransferase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/18035" data-toggle="tooltip" data-placement="top" title=""The aggregation, arrangement and bonding together of a set of components to form a protein complex, occurring at the level of an individual cell." [GOC:jl]">GO:0034622</a></td> <td class="col-xs-6">cellular protein-containing complex assembly</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/18139" data-toggle="tooltip" data-placement="top" title=""A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of one or more nucleosomes." [GOC:mah]">GO:0034728</a></td> <td class="col-xs-6">nucleosome organization</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/21759" data-toggle="tooltip" data-placement="top" title=""The addition of an acyl group, any group or radical of the form RCO- where R is an organic group, to a protein amino acid." [GOC:jl]">GO:0043543</a></td> <td class="col-xs-6">protein acylation</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/22134" data-toggle="tooltip" data-placement="top" title=""Any process in which macromolecules aggregate, disaggregate, or are modified, resulting in the formation, disassembly, or alteration of a protein complex." [GOC:mah]">GO:0043933</a></td> <td class="col-xs-6">protein-containing complex subunit organization</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/22963" data-toggle="tooltip" data-placement="top" title=""A protein complex that plays a role in the process of DNA packaging." [GOC:jl]">GO:0044815</a></td> <td class="col-xs-6">DNA packaging complex</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/31429" data-toggle="tooltip" data-placement="top" title=""Catalysis of the reaction: acetyl-CoA + lysine in peptide = CoA + N-acetyl-lysine-peptide." [GOC:dph]">GO:0061733</a></td> <td class="col-xs-6">peptide-lysine-N-acetyltransferase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/31718" data-toggle="tooltip" data-placement="top" title=""The aggregation, arrangement and bonding together of a set of macromolecules to form a protein-containing complex." [GOC:jl]">GO:0065003</a></td> <td class="col-xs-6">protein-containing complex assembly</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/31719" data-toggle="tooltip" data-placement="top" title=""The aggregation, arrangement and bonding together of proteins and DNA molecules to form a protein-DNA complex." [GOC:jl]">GO:0065004</a></td> <td class="col-xs-6">protein-DNA complex assembly</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/33524" data-toggle="tooltip" data-placement="top" title=""Any process in which macromolecules aggregate, disaggregate, or are modified, resulting in the formation, disassembly, or alteration of a protein-DNA complex." [GOC:mah]">GO:0071824</a></td> <td class="col-xs-6">protein-DNA complex subunit organization</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/33540" data-toggle="tooltip" data-placement="top" title=""A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellular component." [GOC:mah]">GO:0071840</a></td> <td class="col-xs-6">cellular component organization or biogenesis</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/36012" data-toggle="tooltip" data-placement="top" title=""Interacting selectively and non-covalently with an organic cyclic compound, any molecular entity that contains carbon arranged in a cyclic molecular structure." [CHEBI:33832, GOC:sjw, PMID:7583672]">GO:0097159</a></td> <td class="col-xs-6">organic cyclic compound binding</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/40582" data-toggle="tooltip" data-placement="top" title=""Interacting selectively and non-covalently with heterocyclic compound." [GOC:TermGenie]">GO:1901363</a></td> <td class="col-xs-6">heterocyclic compound binding</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Neighborhood</td> </tr> </tbody> </table> </div> </div> <div class="tab-pane fade" id="tab3default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="interpro_table"> <thead> <tr> <th class="col-xs-3" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/interpro_domain" data-target="#helpModal">InterPro domains</abbr></th> <th class="col-xs-5" data-sort="string-ins"><span class="sort-icon"></span>Description</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Start</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Stop</th> </tr> </thead> <tbody> <tr> <td class="col-xs-3"><a href="/interpro/view/3251">IPR003958</a></td> <td class="col-xs-5">CBFA_NFYB_domain</td> <td class="col-xs-2">8</td> <td class="col-xs-2">71</td> </tr> </tbody> </table> </div> </div> </div> </div> </div> <div class="row"> <div class="col-lg-12 col-md-12 col-sm-12"> <div class="panel panel-default"> <div class="panel-heading" id="links">External Links</div> <div class="table-responsive"> <table class="table table-striped table-separated"> <tbody> <tr> <td><em>No external refs found!</em></td> </td> </tr> </tbody> </table> </div> </div> </div> </div> <div class="modal" id="profileModal" tabindex="-1" role="dialog" aria-labelledby="profileModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> </div> </div> </div> <footer class="footer" id="footer"> <div class="container"> <div class="row"> <div class="col-xs-2"><strong class="text-muted"><a href="/features" class="text-muted">CoNekT</a></strong></div> <div class="col-xs-2"><a href="/about" class="text-muted">About</a></div> <div class="col-xs-2"><a href="/contact" class="text-muted">Contact</a></div> <div class="col-xs-2"><a href="/disclaimer" class="text-muted">Disclaimer</a></div> <div class="col-xs-2"><a href="/privacy" class="text-muted">Privacy policy</a></div> </div> </div> </footer> <div class="modal" id="helpModal" tabindex="-1" role="dialog" aria-labelledby="helpModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> <div class="modal" id="loaderModal" tabindex="-1" role="dialog" aria-labelledby="loaderModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> <div class="modal-body"> <div id="leafy_loader"></div> <p class="text-center text-muted" id="leafy_loader_text">Loading ... please wait ... </p> <p class="text-center" id="leafy_loader_close_btn" style="display:none"><button type="button" class="btn btn-primary" data-dismiss="modal" style>Close</button></p> </div> </div> </div> </div> <script src="/static/js/jquery.min.js"></script> <script src="/static/js/bootstrap.min.js"></script> <script src="/static/js/stupidtable.min.js"></script> <script src="/static/js/TweenMax.min.js"></script> <script src="/static/js/jquery.qtip.min.js"></script> <script src="/static/js/planet_loader.js"></script> <script> function init_qtip() { $('.qtip_tooltip').each(function() { $(this).qtip({ content: { text: function(event, api) { $.ajax({ url: api.elements.target.attr('qtip_href') }) .then(function(content) { // Set the tooltip content upon successful retrieval api.set('content.text', content); 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