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  5. AMTR_s00045p00225280

AMTR_s00045p00225280 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00045.319

Description : Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera


Gene families : OG0002639 (Archaeplastida) Phylogenetic Tree(s): OG0002639_tree ,
OG_05_0002449 (LandPlants) Phylogenetic Tree(s): OG_05_0002449_tree ,
OG_06_0002283 (SeedPlants) Phylogenetic Tree(s): OG_06_0002283_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00045p00225280
Cluster HCCA: Cluster_209

Target Alias Description ECC score Gene Family Method Actions
AT3G16640 TCTP translationally controlled tumor protein 0.04 Archaeplastida
GSVIVT01017723001 No alias Translationally-controlled tumor protein homolog... 0.05 Archaeplastida
LOC_Os11g43900.1 No alias Translationally-controlled tumor protein homolog... 0.05 Archaeplastida
Solyc01g099770.3.1 No alias Translationally-controlled tumor protein homolog... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008430 selenium binding IEP Neighborhood
CC GO:0019008 molybdopterin synthase complex IEP Neighborhood
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
BP GO:0043545 molybdopterin cofactor metabolic process IEP Neighborhood
BP GO:0051189 prosthetic group metabolic process IEP Neighborhood
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Neighborhood
InterPro domains Description Start Stop
IPR018105 Translational_control_tumour_p 1 165
No external refs found!