GSVIVT01036757001

Description : Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana

Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01036757001
Cluster	HCCA: Cluster_35

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00014p00257090	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g08070,...	0.04	Archaeplastida
AMTR_s00019p00080380	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g59720,...	0.03	Archaeplastida
AMTR_s00029p00204910	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g19191,...	0.03	Archaeplastida
AMTR_s00029p00235510	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein DOT4,...	0.05	Archaeplastida
AMTR_s00098p00155650	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At5g39350...	0.03	Archaeplastida
AT1G06140	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.04	Archaeplastida
AT1G71490	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.04	Archaeplastida
AT1G77010	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.04	Archaeplastida
AT2G03880	REME1	Pentatricopeptide repeat (PPR) superfamily protein	0.04	Archaeplastida
AT4G33170	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.06	Archaeplastida
AT5G65570	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
GSVIVT01022516001	No alias	Pentatricopeptide repeat-containing protein At5g06540...	0.07	Archaeplastida
Gb_04091	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.06	Archaeplastida
Gb_06576	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.04	Archaeplastida
Gb_08036	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
Gb_09797	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.03	Archaeplastida
Gb_10726	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
Gb_11222	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
Gb_15874	No alias	RNA editing factor (ECB2/VAC1)	0.04	Archaeplastida
Gb_17177	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_18600	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.06	Archaeplastida
Gb_20910	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Gb_21824	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.04	Archaeplastida
Gb_22613	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
Gb_23124	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.04	Archaeplastida
Gb_24816	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
Gb_25271	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
Gb_27176	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
Gb_29557	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
Gb_32017	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.04	Archaeplastida
Gb_34299	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
Gb_35599	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.05	Archaeplastida
Gb_36839	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.05	Archaeplastida
Gb_38158	No alias	OTP70 plastidial RNA splicing factor	0.05	Archaeplastida
Gb_40436	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
Gb_40766	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.05	Archaeplastida
LOC_Os01g08120.1	No alias	RNA editing factor (OTP81)	0.05	Archaeplastida
LOC_Os01g40720.1	No alias	RNA editing factor (MEF7)	0.05	Archaeplastida
LOC_Os02g06880.1	No alias	Pentatricopeptide repeat-containing protein At4g21065...	0.11	Archaeplastida
LOC_Os02g07050.1	No alias	Pentatricopeptide repeat-containing protein At4g20770...	0.04	Archaeplastida
LOC_Os03g13230.1	No alias	Pentatricopeptide repeat-containing protein At4g37170...	0.03	Archaeplastida
LOC_Os03g56850.1	No alias	Pentatricopeptide repeat-containing protein At4g21300...	0.05	Archaeplastida
LOC_Os03g59264.1	No alias	lectin chaperone (CRT)	0.03	Archaeplastida
LOC_Os03g60690.1	No alias	Pentatricopeptide repeat-containing protein At4g21065...	0.06	Archaeplastida
LOC_Os03g63510.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
LOC_Os04g02850.1	No alias	RNA editing factor (OTP84)	0.03	Archaeplastida
LOC_Os04g35650.1	No alias	Pentatricopeptide repeat-containing protein At3g26540...	0.04	Archaeplastida
LOC_Os04g51350.1	No alias	RNA editing factor (AEF1)	0.03	Archaeplastida
LOC_Os05g05490.1	No alias	Pentatricopeptide repeat-containing protein At3g05340...	0.05	Archaeplastida
LOC_Os05g30710.1	No alias	Pentatricopeptide repeat-containing protein At1g20230...	0.06	Archaeplastida
LOC_Os05g50460.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
LOC_Os06g12510.1	No alias	Pentatricopeptide repeat-containing protein At5g15300...	0.11	Archaeplastida
LOC_Os07g02280.1	No alias	RNA editing factor (OTP80)	0.03	Archaeplastida
LOC_Os07g10400.1	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
LOC_Os07g25500.1	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.03	Archaeplastida
LOC_Os07g39910.1	No alias	Pentatricopeptide repeat-containing protein At1g25360...	0.03	Archaeplastida
LOC_Os07g44299.1	No alias	Pentatricopeptide repeat-containing protein At2g29760,...	0.06	Archaeplastida
LOC_Os08g28830.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
LOC_Os11g14980.1	No alias	Pentatricopeptide repeat-containing protein At4g21300...	0.06	Archaeplastida
LOC_Os11g45410.1	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
LOC_Os12g06070.1	No alias	Pentatricopeptide repeat-containing protein At5g04780,...	0.07	Archaeplastida
LOC_Os12g13110.1	No alias	Pentatricopeptide repeat-containing protein At2g22410,...	0.07	Archaeplastida
LOC_Os12g30620.1	No alias	Pentatricopeptide repeat-containing protein At3g29230...	0.04	Archaeplastida
MA_10214098g0010	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
MA_103380g0010	No alias	Pentatricopeptide repeat-containing protein At3g24000,...	0.05	Archaeplastida
MA_10432670g0020	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
MA_10435641g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.06	Archaeplastida
MA_107356g0010	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
MA_112066g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
MA_114565g0020	No alias	Pentatricopeptide repeat-containing protein At5g16860...	0.03	Archaeplastida
MA_115669g0020	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.04	Archaeplastida
MA_116442g0010	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
MA_119635g0010	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
MA_131g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.04	Archaeplastida
MA_136188g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_138190g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_140208g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.06	Archaeplastida
MA_14381g0010	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.04	Archaeplastida
MA_18383g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.06	Archaeplastida
MA_185098g0010	No alias	Pentatricopeptide repeat-containing protein At3g49170,...	0.03	Archaeplastida
MA_285386g0010	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.04	Archaeplastida
MA_3449g0010	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
MA_3471g0010	No alias	RNA editing factor (MEF19)	0.03	Archaeplastida
MA_3612g0010	No alias	Pentatricopeptide repeat-containing protein At5g16860...	0.04	Archaeplastida
MA_39263g0010	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.04	Archaeplastida
MA_43497g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.07	Archaeplastida
MA_474261g0010	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.06	Archaeplastida
MA_502206g0010	No alias	Pentatricopeptide repeat-containing protein At1g20230...	0.05	Archaeplastida
MA_511569g0010	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
MA_57048g0010	No alias	Pentatricopeptide repeat-containing protein At3g09040,...	0.03	Archaeplastida
MA_59148g0010	No alias	RNA editing factor (MEF11)	0.03	Archaeplastida
MA_66417g0010	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.04	Archaeplastida
MA_68707g0010	No alias	RNA editing factor (MEF1)	0.03	Archaeplastida
MA_742g0010	No alias	Putative pentatricopeptide repeat-containing protein...	0.06	Archaeplastida
MA_77437g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_90090g0010	No alias	Pentatricopeptide repeat-containing protein At4g39530...	0.03	Archaeplastida
Solyc01g091610.1.1	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.05	Archaeplastida
Solyc02g005280.1.1	No alias	Pentatricopeptide repeat-containing protein At1g50270...	0.04	Archaeplastida
Solyc03g007840.1.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Solyc03g082830.2.1	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.04	Archaeplastida
Solyc04g016540.2.1	No alias	Pentatricopeptide repeat-containing protein At2g39620...	0.06	Archaeplastida
Solyc04g063300.3.1	No alias	Pentatricopeptide repeat-containing protein At3g26540...	0.04	Archaeplastida
Solyc06g009500.1.1	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.06	Archaeplastida
Solyc06g084580.1.1	No alias	Pentatricopeptide repeat-containing protein At4g20770...	0.04	Archaeplastida
Solyc07g005740.1.1	No alias	Pentatricopeptide repeat-containing protein At4g21065...	0.04	Archaeplastida
Solyc07g062820.1.1	No alias	RNA editing factor (SEL1/PDM1)	0.03	Archaeplastida
Solyc09g092150.1.1	No alias	RNA editing factor (MEF21)	0.03	Archaeplastida
Solyc11g005970.1.1	No alias	Pentatricopeptide repeat-containing protein At3g24000,...	0.04	Archaeplastida
Solyc11g007230.1.1	No alias	Pentatricopeptide repeat-containing protein At3g53360,...	0.03	Archaeplastida
Solyc11g008970.1.1	No alias	Pentatricopeptide repeat-containing protein At4g39952,...	0.05	Archaeplastida
Solyc11g062250.2.1	No alias	Pentatricopeptide repeat-containing protein At2g22410,...	0.05	Archaeplastida
Zm00001e009339_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
MF	GO:0008134	transcription factor binding	IEP	Neighborhood
MF	GO:0017025	TBP-class protein binding	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	44	73
IPR002885	Pentatricopeptide_repeat	246	276
IPR002885	Pentatricopeptide_repeat	456	478
IPR002885	Pentatricopeptide_repeat	145	174
IPR002885	Pentatricopeptide_repeat	352	379
IPR002885	Pentatricopeptide_repeat	117	140
IPR032867	DYW_dom	553	677
IPR002885	Pentatricopeptide_repeat	380	427
IPR002885	Pentatricopeptide_repeat	279	325

External Links

No external refs found!

GSVIVT01036757001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation