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  5. AMTR_s00046p00028310

AMTR_s00046p00028310 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00046.6

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS11 component


Gene families : OG0002226 (Archaeplastida) Phylogenetic Tree(s): OG0002226_tree ,
OG_05_0002056 (LandPlants) Phylogenetic Tree(s): OG_05_0002056_tree ,
OG_06_0002184 (SeedPlants) Phylogenetic Tree(s): OG_06_0002184_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00046p00028310
Cluster HCCA: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
AT3G48930 EMB1080 Nucleic acid-binding, OB-fold-like protein 0.16 Archaeplastida
AT4G30800 No alias Nucleic acid-binding, OB-fold-like protein 0.08 Archaeplastida
AT5G23740 RPS11-BETA ribosomal protein S11-beta 0.22 Archaeplastida
Cpa|evm.model.tig00000551.22 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 Archaeplastida
Cre12.g514500 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.15 Archaeplastida
GSVIVT01012877001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 Archaeplastida
GSVIVT01035927001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.15 Archaeplastida
Gb_14912 No alias component RPS11 of SSU proteome 0.15 Archaeplastida
Gb_27579 No alias component RPS11 of SSU proteome 0.06 Archaeplastida
LOC_Os04g42380.1 No alias component RPS11 of SSU proteome 0.11 Archaeplastida
LOC_Os04g52361.1 No alias component RPS11 of SSU proteome 0.17 Archaeplastida
LOC_Os08g10608.1 No alias component RPS11 of SSU proteome 0.13 Archaeplastida
MA_19350g0010 No alias component RPS11 of SSU proteome 0.13 Archaeplastida
Mp4g23360.1 No alias component RPS11 of SSU proteome 0.18 Archaeplastida
Mp6g10500.1 No alias component RPS11 of SSU proteome 0.19 Archaeplastida
Pp3c14_9600V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.15 Archaeplastida
Pp3c1_27980V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.15 Archaeplastida
Pp3c2_13690V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.12 Archaeplastida
Pp3s116_30V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.16 Archaeplastida
Smo268639 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 Archaeplastida
Solyc06g073790.3.1 No alias component RPS11 of SSU proteome 0.13 Archaeplastida
Solyc06g073800.3.1 No alias component RPS11 of SSU proteome 0.1 Archaeplastida
Solyc12g042080.2.1 No alias component RPS11 of SSU proteome 0.14 Archaeplastida
Zm00001e006955_P001 No alias component RPS11 of SSU proteome 0.11 Archaeplastida
Zm00001e041635_P001 No alias component RPS11 of SSU proteome 0.11 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005853 eukaryotic translation elongation factor 1 complex IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006839 mitochondrial transport IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0030150 protein import into mitochondrial matrix IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0065002 intracellular protein transmembrane transport IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0070585 protein localization to mitochondrion IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0071806 protein transmembrane transport IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072655 establishment of protein localization to mitochondrion IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1990542 mitochondrial transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR000266 Ribosomal_S17/S11 106 175
No external refs found!