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  5. GSVIVT01037263001

GSVIVT01037263001


Description : Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana


Gene families : OG0000731 (Archaeplastida) Phylogenetic Tree(s): OG0000731_tree ,
OG_05_0000430 (LandPlants) Phylogenetic Tree(s): OG_05_0000430_tree ,
OG_06_0000220 (SeedPlants) Phylogenetic Tree(s): OG_06_0000220_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01037263001
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
AT5G40400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Solyc02g021270.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc11g073270.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0070461 SAGA-type complex IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 126 159
IPR002885 Pentatricopeptide_repeat 441 473
IPR002885 Pentatricopeptide_repeat 480 528
IPR002885 Pentatricopeptide_repeat 235 284
IPR002885 Pentatricopeptide_repeat 165 214
IPR002885 Pentatricopeptide_repeat 306 354
IPR002885 Pentatricopeptide_repeat 62 109
IPR002885 Pentatricopeptide_repeat 554 587
IPR002885 Pentatricopeptide_repeat 375 424
No external refs found!