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  5. GSVIVT01037332001

GSVIVT01037332001


Description : Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01037332001
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00181560 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g25360... 0.04 Archaeplastida
AMTR_s00008p00153950 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
AMTR_s00040p00098330 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
AMTR_s00051p00085060 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g16610... 0.03 Archaeplastida
AMTR_s00065p00031420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.03 Archaeplastida
AMTR_s00068p00031610 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AT1G06140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT1G69350 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT3G13770 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
Gb_02379 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
Gb_02808 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Gb_03263 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Gb_03545 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.03 Archaeplastida
Gb_04828 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Gb_04844 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_10113 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.03 Archaeplastida
Gb_11925 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_12240 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Gb_18015 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Gb_21824 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
Gb_22996 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.04 Archaeplastida
Gb_26155 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Gb_27926 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.05 Archaeplastida
Gb_32439 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_33328 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_33726 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_37254 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.04 Archaeplastida
Gb_38249 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
LOC_Os03g63260.3 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
LOC_Os07g10400.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
LOC_Os12g30620.1 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.03 Archaeplastida
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
MA_10429540g0020 No alias Pentatricopeptide repeat-containing protein At4g14850... 0.04 Archaeplastida
MA_107356g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_114565g0020 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.05 Archaeplastida
MA_114722g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_305950g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_3449g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_3502g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
MA_36643g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Archaeplastida
MA_39263g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
MA_39801g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_483636g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_502206g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
MA_52613g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_683665g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_83898g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_8607116g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
MA_953793g0020 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
MA_99220g0010 No alias Pentatricopeptide repeat-containing protein At5g55740,... 0.03 Archaeplastida
Smo70490 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Solyc01g081560.2.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Solyc01g090510.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Solyc01g100790.1.1 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
Solyc02g005280.1.1 No alias Pentatricopeptide repeat-containing protein At1g50270... 0.03 Archaeplastida
Solyc02g014360.3.1 No alias RNA editing factor (MEF11) 0.03 Archaeplastida
Solyc02g071300.1.1 No alias Pentatricopeptide repeat-containing protein At5g46460,... 0.04 Archaeplastida
Solyc02g072020.3.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc03g082830.2.1 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Solyc03g111210.4.1 No alias RNA editing factor (OTP80) 0.04 Archaeplastida
Solyc03g119950.1.1 No alias RNA editing factor (ECB2/VAC1) 0.06 Archaeplastida
Solyc04g009210.1.1 No alias Pentatricopeptide repeat-containing protein At5g08305... 0.03 Archaeplastida
Solyc04g063300.3.1 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.03 Archaeplastida
Solyc04g076330.3.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.05 Archaeplastida
Solyc05g012630.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Solyc06g009500.1.1 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
Solyc06g062610.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Solyc07g053520.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc07g055310.1.1 No alias Pentatricopeptide repeat-containing protein At2g41080... 0.03 Archaeplastida
Solyc07g062820.1.1 No alias RNA editing factor (SEL1/PDM1) 0.05 Archaeplastida
Solyc08g023640.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.04 Archaeplastida
Solyc09g009950.4.1 No alias RNA editing factor (MEF10) 0.03 Archaeplastida
Solyc09g010070.1.1 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.04 Archaeplastida
Solyc09g082450.1.1 No alias RNA editing factor (YS1) 0.05 Archaeplastida
Solyc09g092050.4.1 No alias Pentatricopeptide repeat-containing protein At1g04840... 0.04 Archaeplastida
Solyc11g005970.1.1 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
Solyc11g011860.1.1 No alias Pentatricopeptide repeat-containing protein At3g14330... 0.03 Archaeplastida
Solyc11g065250.1.1 No alias Pentatricopeptide repeat-containing protein At5g39680... 0.03 Archaeplastida
Solyc11g067210.1.1 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Solyc11g071370.1.1 No alias RNA editing factor (CLB19) 0.03 Archaeplastida
Zm00001e001918_P001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
Zm00001e003562_P001 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
Zm00001e006544_P001 No alias No annotation 0.04 Archaeplastida
Zm00001e011748_P001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.05 Archaeplastida
Zm00001e034478_P001 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.04 Archaeplastida
Zm00001e035817_P001 No alias Pentatricopeptide repeat-containing protein At4g32430,... 0.03 Archaeplastida
Zm00001e039394_P003 No alias Pentatricopeptide repeat-containing protein At5g04780,... 0.04 Archaeplastida
Zm00001e041048_P001 No alias RNA editing factor (OTP86) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 563 591
IPR032867 DYW_dom 595 718
IPR002885 Pentatricopeptide_repeat 75 121
IPR002885 Pentatricopeptide_repeat 422 469
IPR002885 Pentatricopeptide_repeat 321 367
IPR002885 Pentatricopeptide_repeat 175 222
No external refs found!