GSVIVT01037348001

Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase

Gene families : OG0000046 (Archaeplastida) Phylogenetic Tree(s): OG0000046_tree ,
OG_05_0000020 (LandPlants) Phylogenetic Tree(s): OG_05_0000020_tree ,
OG_06_0000014 (SeedPlants) Phylogenetic Tree(s): OG_06_0000014_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01037348001
Cluster	HCCA: Cluster_80

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00238240	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
AMTR_s00038p00046180	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.05	Archaeplastida
AMTR_s00129p00047530	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
AT1G02810	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.05	Archaeplastida
AT1G23200	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.05	Archaeplastida
AT1G53830	ATPME2, PME2	pectin methylesterase 2	0.03	Archaeplastida
AT2G47550	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	Archaeplastida
AT3G10710	RHS12	root hair specific 12	0.03	Archaeplastida
AT3G43270	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	Archaeplastida
AT3G47400	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	Archaeplastida
AT3G59010	PME61	pectin methylesterase 61	0.03	Archaeplastida
AT5G04960	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	Archaeplastida
AT5G04970	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	Archaeplastida
AT5G51490	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.04	Archaeplastida
AT5G51500	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.04	Archaeplastida
GSVIVT01027652001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.1	Archaeplastida
GSVIVT01028040001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.06	Archaeplastida
GSVIVT01028041001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.04	Archaeplastida
GSVIVT01037349001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.06	Archaeplastida
GSVIVT01038546001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.04	Archaeplastida
Gb_03174	No alias	pectin methylesterase	0.04	Archaeplastida
Gb_06354	No alias	pectin methylesterase	0.04	Archaeplastida
Gb_10523	No alias	pectin methylesterase	0.04	Archaeplastida
Gb_24214	No alias	pectin methylesterase	0.05	Archaeplastida
Gb_28387	No alias	pectin methylesterase	0.04	Archaeplastida
LOC_Os01g15039.1	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os01g21034.1	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os01g65790.1	No alias	pectin methylesterase	0.05	Archaeplastida
LOC_Os02g54190.1	No alias	pectin methylesterase	0.04	Archaeplastida
LOC_Os07g47830.1	No alias	pectin methylesterase	0.04	Archaeplastida
LOC_Os08g34900.1	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os11g36240.1	No alias	pectin methylesterase	0.04	Archaeplastida
MA_10332149g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_10372207g0010	No alias	pectin methylesterase	0.04	Archaeplastida
MA_10377619g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_10434624g0020	No alias	pectin methylesterase	0.02	Archaeplastida
MA_10435891g0010	No alias	pectin methylesterase	0.03	Archaeplastida
MA_130858g0010	No alias	pectin methylesterase	0.03	Archaeplastida
MA_133919g0010	No alias	pectin methylesterase	0.02	Archaeplastida
MA_158002g0020	No alias	pectin methylesterase	0.03	Archaeplastida
MA_2017g0010	No alias	pectin methylesterase	0.03	Archaeplastida
MA_26888g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_354248g0010	No alias	pectin methylesterase	0.03	Archaeplastida
MA_648837g0010	No alias	pectin methylesterase	0.04	Archaeplastida
MA_84680g0010	No alias	pectin methylesterase	0.07	Archaeplastida
MA_931259g0010	No alias	pectin methylesterase	0.03	Archaeplastida
MA_96515g0010	No alias	pectin methylesterase	0.03	Archaeplastida
Mp8g00060.1	No alias	pectin methylesterase	0.03	Archaeplastida
Pp3c17_6440V3.1	No alias	pectin methylesterase PCR fragment F	0.04	Archaeplastida
Pp3c18_22120V3.1	No alias	pectin methylesterase PCR fragment F	0.03	Archaeplastida
Pp3c21_11740V3.1	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	Archaeplastida
Pp3c26_2170V3.1	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.02	Archaeplastida
Smo266995	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
Solyc01g091050.4.1	No alias	pectin methylesterase	0.03	Archaeplastida
Solyc01g099950.1.1	No alias	pectin methylesterase	0.04	Archaeplastida
Solyc02g014300.2.1	No alias	pectin methylesterase	0.06	Archaeplastida
Solyc02g080200.4.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc02g081990.3.1	No alias	pectin methylesterase	0.04	Archaeplastida
Solyc03g083840.3.1	No alias	pectin methylesterase	0.05	Archaeplastida
Solyc03g083870.4.1	No alias	pectin methylesterase	0.06	Archaeplastida
Solyc07g017600.3.1	No alias	pectin methylesterase	0.03	Archaeplastida
Zm00001e009863_P001	No alias	pectin methylesterase	0.03	Archaeplastida
Zm00001e017514_P001	No alias	pectin methylesterase	0.04	Archaeplastida
Zm00001e025576_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	Interproscan
BP	GO:0042545	cell wall modification	IEA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0003854	3-beta-hydroxy-delta5-steroid dehydrogenase activity	IEP	Neighborhood
MF	GO:0004568	chitinase activity	IEP	Neighborhood
MF	GO:0004592	pantoate-beta-alanine ligase activity	IEP	Neighborhood
MF	GO:0004601	peroxidase activity	IEP	Neighborhood
MF	GO:0005506	iron ion binding	IEP	Neighborhood
BP	GO:0006022	aminoglycan metabolic process	IEP	Neighborhood
BP	GO:0006026	aminoglycan catabolic process	IEP	Neighborhood
BP	GO:0006030	chitin metabolic process	IEP	Neighborhood
BP	GO:0006032	chitin catabolic process	IEP	Neighborhood
BP	GO:0006040	amino sugar metabolic process	IEP	Neighborhood
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Neighborhood
BP	GO:0006694	steroid biosynthetic process	IEP	Neighborhood
BP	GO:0006766	vitamin metabolic process	IEP	Neighborhood
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Neighborhood
BP	GO:0006771	riboflavin metabolic process	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006979	response to oxidative stress	IEP	Neighborhood
BP	GO:0008202	steroid metabolic process	IEP	Neighborhood
MF	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity	IEP	Neighborhood
BP	GO:0009110	vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0009231	riboflavin biosynthetic process	IEP	Neighborhood
BP	GO:0015939	pantothenate metabolic process	IEP	Neighborhood
BP	GO:0015940	pantothenate biosynthetic process	IEP	Neighborhood
MF	GO:0016209	antioxidant activity	IEP	Neighborhood
MF	GO:0016229	steroid dehydrogenase activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016881	acid-amino acid ligase activity	IEP	Neighborhood
MF	GO:0016887	ATPase activity	IEP	Neighborhood
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	Neighborhood
BP	GO:0017144	drug metabolic process	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
MF	GO:0033764	steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0042726	flavin-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0042737	drug catabolic process	IEP	Neighborhood
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Neighborhood
BP	GO:0046348	amino sugar catabolic process	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
BP	GO:1901071	glucosamine-containing compound metabolic process	IEP	Neighborhood
BP	GO:1901072	glucosamine-containing compound catabolic process	IEP	Neighborhood
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	1	245

External Links

No external refs found!

GSVIVT01037348001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation