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  5. GSVIVT01037506001

GSVIVT01037506001


Description : Pentatricopeptide repeat-containing protein At1g53600, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0012283 (Archaeplastida) Phylogenetic Tree(s): OG0012283_tree ,
OG_05_0011025 (LandPlants) Phylogenetic Tree(s): OG_05_0011025_tree ,
OG_06_0018393 (SeedPlants) Phylogenetic Tree(s): OG_06_0018393_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01037506001
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01008664001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.06 Archaeplastida
LOC_Os08g03676.1 No alias Pentatricopeptide repeat-containing protein At1g53600,... 0.04 Archaeplastida
MA_77585g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.08 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003972 RNA ligase (ATP) activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008452 RNA ligase activity IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 188 216
IPR002885 Pentatricopeptide_repeat 127 151
IPR002885 Pentatricopeptide_repeat 39 60
IPR002885 Pentatricopeptide_repeat 324 352
IPR002885 Pentatricopeptide_repeat 355 382
IPR002885 Pentatricopeptide_repeat 63 90
IPR002885 Pentatricopeptide_repeat 296 322
IPR002885 Pentatricopeptide_repeat 95 125
IPR002885 Pentatricopeptide_repeat 560 584
IPR002885 Pentatricopeptide_repeat 385 429
IPR002885 Pentatricopeptide_repeat 484 531
IPR002885 Pentatricopeptide_repeat 219 267
No external refs found!