Description : Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
Gene families : OG0000444 (Archaeplastida) Phylogenetic Tree(s): OG0000444_tree ,
OG_05_0011301 (LandPlants) Phylogenetic Tree(s): OG_05_0011301_tree ,
OG_06_0011217 (SeedPlants) Phylogenetic Tree(s): OG_06_0011217_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: GSVIVT01037635001 | |
Cluster | HCCA: Cluster_63 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00157p00079360 | evm_27.TU.AmTr_v1... | Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana | 0.05 | Archaeplastida | |
AMTR_s00157p00080130 | evm_27.TU.AmTr_v1... | Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia | 0.04 | Archaeplastida | |
AT3G19130 | ATRBP47B, RBP47B | RNA-binding protein 47B | 0.05 | Archaeplastida | |
Cre16.g652900 | No alias | Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana | 0.02 | Archaeplastida | |
MA_10433660g0010 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.02 | Archaeplastida | |
Pp3c12_10910V3.1 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.04 | Archaeplastida | |
Pp3c12_10960V3.1 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.04 | Archaeplastida | |
Solyc01g108500.4.1 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.04 | Archaeplastida | |
Solyc03g031720.3.1 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.03 | Archaeplastida | |
Solyc07g064510.3.1 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.05 | Archaeplastida | |
Solyc10g005260.3.1 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.04 | Archaeplastida | |
Solyc11g065880.2.1 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.03 | Archaeplastida | |
Zm00001e006878_P004 | No alias | no hits & (original description: none) | 0.06 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Neighborhood |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Neighborhood |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003743 | translation initiation factor activity | IEP | Neighborhood |
MF | GO:0005515 | protein binding | IEP | Neighborhood |
CC | GO:0005681 | spliceosomal complex | IEP | Neighborhood |
BP | GO:0006325 | chromatin organization | IEP | Neighborhood |
BP | GO:0006334 | nucleosome assembly | IEP | Neighborhood |
BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
BP | GO:0006413 | translational initiation | IEP | Neighborhood |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Neighborhood |
BP | GO:0008380 | RNA splicing | IEP | Neighborhood |
BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Neighborhood |
BP | GO:0034728 | nucleosome organization | IEP | Neighborhood |
BP | GO:0065004 | protein-DNA complex assembly | IEP | Neighborhood |
BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000504 | RRM_dom | 54 | 117 |
No external refs found! |