GSVIVT01038188001

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL5 component

Gene families : OG0002752 (Archaeplastida) Phylogenetic Tree(s): OG0002752_tree ,
OG_05_0002866 (LandPlants) Phylogenetic Tree(s): OG_05_0002866_tree ,
OG_06_0003201 (SeedPlants) Phylogenetic Tree(s): OG_06_0003201_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01038188001
Cluster	HCCA: Cluster_60

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00066p00162800	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	Archaeplastida
AT3G25520	OLI5, RPL5A, PGY3, ATL5	ribosomal protein L5	0.22	Archaeplastida
AT5G39740	OLI7, RPL5B	ribosomal protein L5 B	0.24	Archaeplastida
Cpa\|evm.model.tig00000194.49	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.17	Archaeplastida
Cre14.g621450	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	Archaeplastida
Gb_16695	No alias	component RPL5 of LSU proteome component	0.1	Archaeplastida
LOC_Os01g67134.1	No alias	component RPL5 of LSU proteome component	0.16	Archaeplastida
MA_70965g0010	No alias	component RPL5 of LSU proteome component	0.11	Archaeplastida
Mp4g15800.1	No alias	component RPL5 of LSU proteome component	0.2	Archaeplastida
Pp3c11_6420V3.1	No alias	ribosomal protein L5 B	0.19	Archaeplastida
Pp3c1_7160V3.1	No alias	ribosomal protein L5 B	0.09	Archaeplastida
Pp3c2_31540V3.1	No alias	ribosomal protein L5 B	0.05	Archaeplastida
Pp3c7_25660V3.1	No alias	ribosomal protein L5 B	0.15	Archaeplastida
Smo144921	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	Archaeplastida
Solyc06g007670.4.1	No alias	component RPL5 of LSU proteome component	0.25	Archaeplastida
Solyc06g082870.4.1	No alias	component RPL5 of LSU proteome component	0.17	Archaeplastida
Solyc09g020130.3.1	No alias	component RPL5 of LSU proteome component	0.15	Archaeplastida
Zm00001e000256_P001	No alias	component RPL5 of LSU proteome component	0.13	Archaeplastida
Zm00001e018972_P001	No alias	component RPL5 of LSU proteome component	0.1	Archaeplastida
Zm00001e028563_P004	No alias	component RPL5 of LSU proteome component	0.22	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008097	5S rRNA binding	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Neighborhood
MF	GO:0003697	single-stranded DNA binding	IEP	Neighborhood
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Neighborhood
MF	GO:0003916	DNA topoisomerase activity	IEP	Neighborhood
CC	GO:0005694	chromosome	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006265	DNA topological change	IEP	Neighborhood
BP	GO:0006520	cellular amino acid metabolic process	IEP	Neighborhood
MF	GO:0016597	amino acid binding	IEP	Neighborhood
MF	GO:0016743	carboxyl- or carbamoyltransferase activity	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
MF	GO:0031406	carboxylic acid binding	IEP	Neighborhood
MF	GO:0034061	DNA polymerase activity	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
MF	GO:0043177	organic acid binding	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
BP	GO:0071103	DNA conformation change	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005485	Rbsml_L5_euk/L18_arc	46	207
IPR025607	Rbsml_L5e/L18P_C	223	312

External Links

No external refs found!

GSVIVT01038188001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation