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Description : RNA processing.RNA splicing.U6-associated LSm accessory ribonucleoprotein complex.LSm6 component
Gene families : OG0001499 (Archaeplastida) Phylogenetic Tree(s): OG0001499_tree ,
OG_05_0004530 (LandPlants) Phylogenetic Tree(s): OG_05_0004530_tree ,
OG_06_0006691 (SeedPlants) Phylogenetic Tree(s): OG_06_0006691_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01038197001 | |
| Cluster | HCCA: Cluster_119 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT4G30220 | RUXF | small nuclear ribonucleoprotein F | 0.03 | Archaeplastida | |
| Cpa|evm.model.tig00000944.19 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.02 | Archaeplastida | |
| Cre03.g151750 | No alias | RNA processing.RNA splicing.U6-associated LSm accessory... | 0.03 | Archaeplastida | |
| LOC_Os04g31950.1 | No alias | component LSm6 of U6-associated LSm accessory... | 0.05 | Archaeplastida | |
| LOC_Os11g43620.1 | No alias | component Sm-F of U1/U2/U4/U5-associated Sm accessory... | 0.03 | Archaeplastida | |
| Mp6g01610.1 | No alias | component Sm-F of U1/U2/U4/U5-associated Sm accessory... | 0.04 | Archaeplastida | |
| Pp3c12_17630V3.1 | No alias | small nuclear ribonucleoprotein F | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000160 | phosphorelay signal transduction system | IEP | Neighborhood |
| BP | GO:0001510 | RNA methylation | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| CC | GO:0005634 | nucleus | IEP | Neighborhood |
| CC | GO:0005730 | nucleolus | IEP | Neighborhood |
| BP | GO:0006366 | transcription by RNA polymerase II | IEP | Neighborhood |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0009451 | RNA modification | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| BP | GO:0016556 | mRNA modification | IEP | Neighborhood |
| MF | GO:0019843 | rRNA binding | IEP | Neighborhood |
| BP | GO:0032259 | methylation | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0035556 | intracellular signal transduction | IEP | Neighborhood |
| CC | GO:0043226 | organelle | IEP | Neighborhood |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0043414 | macromolecule methylation | IEP | Neighborhood |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Neighborhood |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | Neighborhood |
| MF | GO:0051540 | metal cluster binding | IEP | Neighborhood |
| BP | GO:0080009 | mRNA methylation | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001163 | LSM_dom_euk/arc | 17 | 81 |
| No external refs found! |