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  5. GSVIVT01038280001

GSVIVT01038280001


Description : Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana


Gene families : OG0003504 (Archaeplastida) Phylogenetic Tree(s): OG0003504_tree ,
OG_05_0002667 (LandPlants) Phylogenetic Tree(s): OG_05_0002667_tree ,
OG_06_0001694 (SeedPlants) Phylogenetic Tree(s): OG_06_0001694_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01038280001
Cluster HCCA: Cluster_222

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00165480 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g07290,... 0.02 Archaeplastida
AMTR_s00002p00251730 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g65560... 0.05 Archaeplastida
AT5G65560 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
Gb_13219 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.04 Archaeplastida
Gb_23231 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.04 Archaeplastida
LOC_Os02g37140.1 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.04 Archaeplastida
LOC_Os06g47570.1 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.05 Archaeplastida
LOC_Os08g20610.1 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.03 Archaeplastida
MA_103970g0010 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.03 Archaeplastida
MA_565112g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Smo62267 No alias Pentatricopeptide repeat-containing protein At1g62910... 0.01 Archaeplastida
Solyc10g081880.3.1 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.07 Archaeplastida
Zm00001e016326_P001 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.03 Archaeplastida
Zm00001e020910_P002 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.06 Archaeplastida
Zm00001e022836_P001 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003689 DNA clamp loader activity IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
CC GO:0005663 DNA replication factor C complex IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
BP GO:0019439 aromatic compound catabolic process IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
MF GO:0033170 protein-DNA loading ATPase activity IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044270 cellular nitrogen compound catabolic process IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046700 heterocycle catabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901361 organic cyclic compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 126 151
IPR002885 Pentatricopeptide_repeat 263 309
IPR002885 Pentatricopeptide_repeat 841 887
IPR002885 Pentatricopeptide_repeat 647 695
IPR002885 Pentatricopeptide_repeat 437 486
IPR002885 Pentatricopeptide_repeat 577 624
IPR002885 Pentatricopeptide_repeat 367 416
IPR002885 Pentatricopeptide_repeat 508 556
IPR002885 Pentatricopeptide_repeat 723 782
IPR002885 Pentatricopeptide_repeat 189 214
IPR002885 Pentatricopeptide_repeat 328 361
IPR002885 Pentatricopeptide_repeat 224 252
No external refs found!