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  5. AMTR_s00046p00168380

AMTR_s00046p00168380Zm00001e005195_P002 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00046.92

Description : Flowering time control protein FCA OS=Arabidopsis thaliana


Gene families : OG0001519 (Archaeplastida) Phylogenetic Tree(s): OG0001519_tree ,
OG_05_0004668 (LandPlants) Phylogenetic Tree(s): OG_05_0004668_tree ,
OG_06_0005506 (SeedPlants) Phylogenetic Tree(s): OG_06_0005506_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00046p00168380
Cluster HCCA: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
Gb_00863 No alias no description available(sp|b8bcz8|fca_orysi : 290.0) 0.05 Archaeplastida
Gb_05124 No alias no description available(sp|b8bcz8|fca_orysi : 224.0) 0.03 Archaeplastida
LOC_Os09g03610.1 No alias no description available(sp|q6k271|fca_orysj : 775.0) 0.05 Archaeplastida
MA_114047g0010 No alias Flowering time control protein FCA OS=Arabidopsis... 0.05 Archaeplastida
MA_5779g0010 No alias Flowering time control protein FCA OS=Arabidopsis... 0.04 Archaeplastida
Mp5g13560.1 No alias RNA-binding protein BRN1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc01g058450.3.1 No alias Flowering time control protein FCA OS=Arabidopsis... 0.07 Archaeplastida
Zm00001e009433_P002 No alias no description available(sp|b8bcz8|fca_orysi : 625.0) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003852 2-isopropylmalate synthase activity IEP Neighborhood
MF GO:0004055 argininosuccinate synthase activity IEP Neighborhood
CC GO:0005665 RNA polymerase II, core complex IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006525 arginine metabolic process IEP Neighborhood
BP GO:0006526 arginine biosynthetic process IEP Neighborhood
BP GO:0006551 leucine metabolic process IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006721 terpenoid metabolic process IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0007155 cell adhesion IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Neighborhood
BP GO:0009064 glutamine family amino acid metabolic process IEP Neighborhood
BP GO:0009081 branched-chain amino acid metabolic process IEP Neighborhood
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Neighborhood
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Neighborhood
BP GO:0009098 leucine biosynthetic process IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
BP GO:0016114 terpenoid biosynthetic process IEP Neighborhood
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
BP GO:0022610 biological adhesion IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044283 small molecule biosynthetic process IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
BP GO:1901605 alpha-amino acid metabolic process IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 64 128
IPR000504 RRM_dom 155 219
IPR001202 WW_dom 567 593
No external refs found!