Description : DNA mismatch repair protein MSH1, mitochondrial OS=Arabidopsis thaliana
Gene families : OG0002173 (Archaeplastida) Phylogenetic Tree(s): OG0002173_tree ,
OG_05_0008521 (LandPlants) Phylogenetic Tree(s): OG_05_0008521_tree ,
OG_06_0009565 (SeedPlants) Phylogenetic Tree(s): OG_06_0009565_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: GSVIVT01038675001 | |
Cluster | HCCA: Cluster_218 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00020629.149 | No alias | No description available | 0.02 | Archaeplastida | |
Mp2g00480.1 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
Pp3c17_13780V3.1 | No alias | DNA mismatch repair protein MutS, type 2 | 0.03 | Archaeplastida | |
Smo141299 | No alias | DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana | 0.02 | Archaeplastida | |
Solyc03g080010.3.1 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005524 | ATP binding | IEA | Interproscan |
BP | GO:0006298 | mismatch repair | IEA | Interproscan |
MF | GO:0030983 | mismatched DNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood |
MF | GO:0005515 | protein binding | IEP | Neighborhood |
BP | GO:0009451 | RNA modification | IEP | Neighborhood |
MF | GO:0009982 | pseudouridine synthase activity | IEP | Neighborhood |
MF | GO:0016866 | intramolecular transferase activity | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000432 | DNA_mismatch_repair_MutS_C | 440 | 621 |
No external refs found! |