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  5. Cre01.g003450

Cre01.g003450


No description available


Gene families : OG0001445 (Archaeplastida) Phylogenetic Tree(s): OG0001445_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g003450
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00110320 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C3H zinc... 0.02 Archaeplastida
AMTR_s00154p00086540 evm_27.TU.AmTr_v1... Zinc finger CCCH domain-containing protein 38... 0.01 Archaeplastida
AMTR_s00154p00087040 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AT3G18640 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.05 Archaeplastida
GSVIVT01008114001 No alias Zinc finger CCCH domain-containing protein 38... 0.02 Archaeplastida
Gb_00875 No alias C3H zinc finger transcription factor 0.02 Archaeplastida
Gb_19122 No alias C3H zinc finger transcription factor 0.01 Archaeplastida
Gb_26302 No alias C3H zinc finger transcription factor 0.01 Archaeplastida
LOC_Os05g41790.1 No alias C3H zinc finger transcription factor 0.01 Archaeplastida
MA_111475g0020 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_321233g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_8408g0030 No alias no hits & (original description: none) 0.01 Archaeplastida
Mp1g05400.1 No alias Zinc finger CCCH domain-containing protein 55 OS=Oryza... 0.02 Archaeplastida
Pp3c4_15980V3.1 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.03 Archaeplastida
Solyc03g006350.3.1 No alias C3H zinc finger transcription factor 0.04 Archaeplastida
Solyc04g064800.4.1 No alias C3H zinc finger transcription factor 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003714 transcription corepressor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!