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  5. Cre01.g024200

Cre01.g024200


Description : RNA processing.RNA 3-end polyadenylation.Cleavage Stimulatory Factor (CstF) complex.CstF64/Rna15 component


Gene families : OG0002124 (Archaeplastida) Phylogenetic Tree(s): OG0002124_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g024200
Cluster HCCA: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01013670001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage... 0.01 Archaeplastida
Gb_06606 No alias component ESP1 of Cleavage Stimulatory Factor (CstF) complex 0.01 Archaeplastida
Gb_13366 No alias component ESP1 of Cleavage Stimulatory Factor (CstF) complex 0.01 Archaeplastida
LOC_Os05g43780.1 No alias component ESP1 of Cleavage Stimulatory Factor (CstF) complex 0.03 Archaeplastida
MA_8861g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp4g14470.1 No alias component CstF64/Rna15 of Cleavage Stimulatory Factor... 0.02 Archaeplastida
Pp3c14_13370V3.1 No alias cleavage stimulating factor 64 0.04 Archaeplastida
Solyc02g069160.3.1 No alias component CstF64/Rna15 of Cleavage Stimulatory Factor... 0.02 Archaeplastida
Solyc03g119460.4.1 No alias component ESP1 of Cleavage Stimulatory Factor (CstF) complex 0.02 Archaeplastida
Zm00001e032123_P001 No alias component ESP1 of Cleavage Stimulatory Factor (CstF) complex 0.02 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0031124 mRNA 3'-end processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP Neighborhood
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0019107 myristoyltransferase activity IEP Neighborhood
MF GO:0019905 syntaxin binding IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 9 78
IPR026896 CSTF_C 348 383
IPR025742 CSTF2_hinge 147 208
No external refs found!