Description : RNA processing.RNA modification.rRNA/tRNA methylation.TRM3 tRNA guanosine-methyltransferase
Gene families : OG0003811 (Archaeplastida) Phylogenetic Tree(s): OG0003811_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Cre01.g027350 | |
Cluster | HCCA: Cluster_22 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT4G17610 | No alias | tRNA/rRNA methyltransferase (SpoU) family protein | 0.03 | Archaeplastida | |
Cpa|evm.model.tig00020812.10 | No alias | RNA processing.RNA modification.rRNA/tRNA... | 0.01 | Archaeplastida | |
GSVIVT01003688001 | No alias | RNA processing.RNA modification.rRNA/tRNA... | 0.01 | Archaeplastida | |
Gb_26193 | No alias | tRNA guanosine-methyltransferase (TRM3) | 0.01 | Archaeplastida | |
MA_10429620g0010 | No alias | tRNA guanosine-methyltransferase (TRM3) | 0.01 | Archaeplastida | |
Mp3g08720.1 | No alias | tRNA guanosine-methyltransferase (TRM3) | 0.01 | Archaeplastida | |
Solyc08g077850.2.1 | No alias | tRNA guanosine-methyltransferase (TRM3) | 0.03 | Archaeplastida | |
Zm00001e000019_P001 | No alias | tRNA guanosine-methyltransferase (TRM3) | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | Interproscan |
BP | GO:0006396 | RNA processing | IEA | Interproscan |
MF | GO:0008173 | RNA methyltransferase activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000213 | tRNA-intron endonuclease activity | IEP | Neighborhood |
BP | GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | IEP | Neighborhood |
BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood |
BP | GO:0002097 | tRNA wobble base modification | IEP | Neighborhood |
BP | GO:0002098 | tRNA wobble uridine modification | IEP | Neighborhood |
MF | GO:0003916 | DNA topoisomerase activity | IEP | Neighborhood |
MF | GO:0003918 | DNA topoisomerase type II (ATP-hydrolyzing) activity | IEP | Neighborhood |
MF | GO:0004000 | adenosine deaminase activity | IEP | Neighborhood |
MF | GO:0004518 | nuclease activity | IEP | Neighborhood |
MF | GO:0004521 | endoribonuclease activity | IEP | Neighborhood |
MF | GO:0004549 | tRNA-specific ribonuclease activity | IEP | Neighborhood |
CC | GO:0005730 | nucleolus | IEP | Neighborhood |
BP | GO:0006265 | DNA topological change | IEP | Neighborhood |
BP | GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | IEP | Neighborhood |
BP | GO:0006399 | tRNA metabolic process | IEP | Neighborhood |
BP | GO:0006996 | organelle organization | IEP | Neighborhood |
BP | GO:0008033 | tRNA processing | IEP | Neighborhood |
BP | GO:0009451 | RNA modification | IEP | Neighborhood |
MF | GO:0009982 | pseudouridine synthase activity | IEP | Neighborhood |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Neighborhood |
MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Neighborhood |
MF | GO:0016853 | isomerase activity | IEP | Neighborhood |
MF | GO:0016866 | intramolecular transferase activity | IEP | Neighborhood |
MF | GO:0016892 | endoribonuclease activity, producing 3'-phosphomonoesters | IEP | Neighborhood |
MF | GO:0016894 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters | IEP | Neighborhood |
MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Neighborhood |
MF | GO:0019239 | deaminase activity | IEP | Neighborhood |
CC | GO:0033588 | Elongator holoenzyme complex | IEP | Neighborhood |
BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
BP | GO:0051276 | chromosome organization | IEP | Neighborhood |
MF | GO:0051536 | iron-sulfur cluster binding | IEP | Neighborhood |
MF | GO:0051540 | metal cluster binding | IEP | Neighborhood |
MF | GO:0061505 | DNA topoisomerase II activity | IEP | Neighborhood |
BP | GO:0071103 | DNA conformation change | IEP | Neighborhood |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Neighborhood |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001537 | SpoU_MeTrfase | 1926 | 2067 |
No external refs found! |