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  5. Cre01.g028200

Cre01.g028200


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).DDX5 pre-mRNA splicing regulator


Gene families : OG0000695 (Archaeplastida) Phylogenetic Tree(s): OG0000695_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g028200
Cluster HCCA: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01017651001 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana 0.02 Archaeplastida
LOC_Os11g46240.1 No alias DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e034614_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 285 363
IPR001650 Helicase_C 636 665
IPR011545 DEAD/DEAH_box_helicase_dom 78 248
No external refs found!