AT1G50020

Description : unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 72 Blast hits to 72 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Gene families : OG0008104 (Archaeplastida) Phylogenetic Tree(s): OG0008104_tree ,
OG_05_0008612 (LandPlants) Phylogenetic Tree(s): OG_05_0008612_tree ,
OG_06_0008958 (SeedPlants) Phylogenetic Tree(s): OG_06_0008958_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G50020
Cluster	HCCA: Cluster_227

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01037044001	No alias	No description available	0.05	Archaeplastida
Gb_39920	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_10429953g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
Smo440550	No alias	No description available	0.02	Archaeplastida
Solyc01g106790.3.1	No alias	no hits & (original description: none)	0.06	Archaeplastida
Zm00001e024587_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0008150	biological_process	ND	Interproscan
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0016020	membrane	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044434	chloroplast part	None	Extended
CC	GO:0044435	plastid part	None	Extended
CC	GO:0044436	thylakoid part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	Neighborhood
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Neighborhood
MF	GO:0004222	metalloendopeptidase activity	IEP	Neighborhood
MF	GO:0004328	formamidase activity	IEP	Neighborhood
BP	GO:0006066	alcohol metabolic process	IEP	Neighborhood
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006787	porphyrin-containing compound catabolic process	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
MF	GO:0008233	peptidase activity	IEP	Neighborhood
MF	GO:0008237	metallopeptidase activity	IEP	Neighborhood
BP	GO:0009056	catabolic process	IEP	Neighborhood
CC	GO:0009368	endopeptidase Clp complex	IEP	Neighborhood
CC	GO:0009526	plastid envelope	IEP	Neighborhood
CC	GO:0009532	plastid stroma	IEP	Neighborhood
CC	GO:0009534	chloroplast thylakoid	IEP	Neighborhood
MF	GO:0009540	zeaxanthin epoxidase [overall] activity	IEP	Neighborhood
CC	GO:0009570	chloroplast stroma	IEP	Neighborhood
CC	GO:0009579	thylakoid	IEP	Neighborhood
BP	GO:0009657	plastid organization	IEP	Neighborhood
BP	GO:0009661	chromoplast organization	IEP	Neighborhood
BP	GO:0009688	abscisic acid biosynthetic process	IEP	Neighborhood
CC	GO:0009707	chloroplast outer membrane	IEP	Neighborhood
CC	GO:0009840	chloroplastic endopeptidase Clp complex	IEP	Neighborhood
CC	GO:0009941	chloroplast envelope	IEP	Neighborhood
BP	GO:0010020	chloroplast fission	IEP	Neighborhood
BP	GO:0010109	regulation of photosynthesis	IEP	Neighborhood
BP	GO:0010190	cytochrome b6f complex assembly	IEP	Neighborhood
BP	GO:0010206	photosystem II repair	IEP	Neighborhood
BP	GO:0010264	myo-inositol hexakisphosphate biosynthetic process	IEP	Neighborhood
CC	GO:0010287	plastoglobule	IEP	Neighborhood
BP	GO:0010304	PSII associated light-harvesting complex II catabolic process	IEP	Neighborhood
BP	GO:0015994	chlorophyll metabolic process	IEP	Neighborhood
BP	GO:0015996	chlorophyll catabolic process	IEP	Neighborhood
BP	GO:0016119	carotene metabolic process	IEP	Neighborhood
BP	GO:0016120	carotene biosynthetic process	IEP	Neighborhood
BP	GO:0016122	xanthophyll metabolic process	IEP	Neighborhood
BP	GO:0016123	xanthophyll biosynthetic process	IEP	Neighborhood
BP	GO:0016143	S-glycoside metabolic process	IEP	Neighborhood
BP	GO:0016144	S-glycoside biosynthetic process	IEP	Neighborhood
MF	GO:0016168	chlorophyll binding	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	Neighborhood
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	IEP	Neighborhood
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	Neighborhood
MF	GO:0016726	oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor	IEP	Neighborhood
BP	GO:0017004	cytochrome complex assembly	IEP	Neighborhood
BP	GO:0017144	drug metabolic process	IEP	Neighborhood
BP	GO:0019439	aromatic compound catabolic process	IEP	Neighborhood
BP	GO:0019637	organophosphate metabolic process	IEP	Neighborhood
BP	GO:0019751	polyol metabolic process	IEP	Neighborhood
BP	GO:0019757	glycosinolate metabolic process	IEP	Neighborhood
BP	GO:0019758	glycosinolate biosynthetic process	IEP	Neighborhood
BP	GO:0019760	glucosinolate metabolic process	IEP	Neighborhood
BP	GO:0019761	glucosinolate biosynthetic process	IEP	Neighborhood
CC	GO:0030076	light-harvesting complex	IEP	Neighborhood
BP	GO:0030091	protein repair	IEP	Neighborhood
BP	GO:0031279	regulation of cyclase activity	IEP	Neighborhood
BP	GO:0031647	regulation of protein stability	IEP	Neighborhood
CC	GO:0031967	organelle envelope	IEP	Neighborhood
CC	GO:0031969	chloroplast membrane	IEP	Neighborhood
CC	GO:0031975	envelope	IEP	Neighborhood
CC	GO:0031976	plastid thylakoid	IEP	Neighborhood
CC	GO:0031977	thylakoid lumen	IEP	Neighborhood
CC	GO:0031984	organelle subcompartment	IEP	Neighborhood
BP	GO:0032958	inositol phosphate biosynthetic process	IEP	Neighborhood
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Neighborhood
BP	GO:0033015	tetrapyrrole catabolic process	IEP	Neighborhood
BP	GO:0033517	myo-inositol hexakisphosphate metabolic process	IEP	Neighborhood
MF	GO:0033743	peptide-methionine (R)-S-oxide reductase activity	IEP	Neighborhood
CC	GO:0042170	plastid membrane	IEP	Neighborhood
BP	GO:0042214	terpene metabolic process	IEP	Neighborhood
BP	GO:0042440	pigment metabolic process	IEP	Neighborhood
BP	GO:0042548	regulation of photosynthesis, light reaction	IEP	Neighborhood
BP	GO:0043289	apocarotenoid biosynthetic process	IEP	Neighborhood
BP	GO:0043467	regulation of generation of precursor metabolites and energy	IEP	Neighborhood
BP	GO:0043572	plastid fission	IEP	Neighborhood
BP	GO:0043647	inositol phosphate metabolic process	IEP	Neighborhood
BP	GO:0044248	cellular catabolic process	IEP	Neighborhood
BP	GO:0044257	cellular protein catabolic process	IEP	Neighborhood
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	Neighborhood
BP	GO:0046149	pigment catabolic process	IEP	Neighborhood
BP	GO:0046165	alcohol biosynthetic process	IEP	Neighborhood
BP	GO:0046173	polyol biosynthetic process	IEP	Neighborhood
BP	GO:0046246	terpene biosynthetic process	IEP	Neighborhood
MF	GO:0046429	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	IEP	Neighborhood
BP	GO:0046700	heterocycle catabolic process	IEP	Neighborhood
BP	GO:0050790	regulation of catalytic activity	IEP	Neighborhood
BP	GO:0050821	protein stabilization	IEP	Neighborhood
BP	GO:0051186	cofactor metabolic process	IEP	Neighborhood
BP	GO:0051187	cofactor catabolic process	IEP	Neighborhood
MF	GO:0051213	dioxygenase activity	IEP	Neighborhood
MF	GO:0051745	4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	IEP	Neighborhood
MF	GO:0052592	oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor	IEP	Neighborhood
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Neighborhood
BP	GO:0090407	organophosphate biosynthetic process	IEP	Neighborhood
BP	GO:1901361	organic cyclic compound catabolic process	IEP	Neighborhood
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Neighborhood
BP	GO:1901575	organic substance catabolic process	IEP	Neighborhood
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Neighborhood
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Neighborhood
BP	GO:1901659	glycosyl compound biosynthetic process	IEP	Neighborhood
BP	GO:1902171	regulation of tocopherol cyclase activity	IEP	Neighborhood
BP	GO:1902645	tertiary alcohol biosynthetic process	IEP	Neighborhood

No InterPro domains available for this sequence

External Links

No external refs found!

AT1G50020

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation