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  5. Cre01.g046237

Cre01.g046237


Description : Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana


Gene families : OG0000572 (Archaeplastida) Phylogenetic Tree(s): OG0000572_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g046237
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00226100 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.01 Archaeplastida
AT1G50410 No alias SNF2 domain-containing protein / helicase... 0.03 Archaeplastida
Cpa|evm.model.tig00021014.10 No alias DNA repair protein RAD5A OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01006339001 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
GSVIVT01034370001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
LOC_Os08g08220.1 No alias chromatin remodeling factor (Rad5). chromatin remodeling... 0.02 Archaeplastida
MA_18567g0010 No alias Helicase-like transcription factor CHR27 OS=Arabidopsis... 0.01 Archaeplastida
Mp8g05230.1 No alias chromatin remodeling factor (Ris1) 0.01 Archaeplastida
Pp3c18_11770V3.1 No alias SNF2 domain-containing protein / helicase... 0.01 Archaeplastida
Smo429547 No alias Chromatin organisation.chromatin remodeling... 0.01 Archaeplastida
Zm00001e021657_P003 No alias chromatin remodeling factor (Rad5). chromatin remodeling... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 2106 2203
IPR000330 SNF2_N 1018 1861
IPR018957 Znf_C3HC4_RING-type 1913 1956
No external refs found!