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  5. AT1G50080

AT1G50080


Description : BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT1G60720.1); Has 42 Blast hits to 42 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).


Gene families : OG0005412 (Archaeplastida) Phylogenetic Tree(s): OG0005412_tree ,
OG_05_0004762 (LandPlants) Phylogenetic Tree(s): OG_05_0004762_tree ,
OG_06_0003099 (SeedPlants) Phylogenetic Tree(s): OG_06_0003099_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G50080
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AT1G45063 No alias copper ion binding;electron carriers 0.04 Archaeplastida
AT5G28615 No alias RNA-directed DNA polymerase (reverse... 0.02 Archaeplastida
AT5G59060 No alias BEST Arabidopsis thaliana protein match is: RNA-directed... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0002679 respiratory burst involved in defense response IEP Neighborhood
MF GO:0004033 aldo-keto reductase (NADP) activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0004737 pyruvate decarboxylase activity IEP Neighborhood
MF GO:0005496 steroid binding IEP Neighborhood
MF GO:0005544 calcium-dependent phospholipid binding IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0006863 purine nucleobase transport IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
MF GO:0008142 oxysterol binding IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009741 response to brassinosteroid IEP Neighborhood
CC GO:0009986 cell surface IEP Neighborhood
MF GO:0010294 abscisic acid glucosyltransferase activity IEP Neighborhood
BP GO:0010411 xyloglucan metabolic process IEP Neighborhood
BP GO:0010541 acropetal auxin transport IEP Neighborhood
BP GO:0010583 response to cyclopentenone IEP Neighborhood
BP GO:0014070 response to organic cyclic compound IEP Neighborhood
MF GO:0015105 arsenite transmembrane transporter activity IEP Neighborhood
BP GO:0015700 arsenite transport IEP Neighborhood
BP GO:0015851 nucleobase transport IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0032934 sterol binding IEP Neighborhood
BP GO:0043090 amino acid import IEP Neighborhood
BP GO:0045730 respiratory burst IEP Neighborhood
BP GO:0048527 lateral root development IEP Neighborhood
BP GO:0048528 post-embryonic root development IEP Neighborhood
BP GO:0090696 post-embryonic plant organ development IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!