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  5. Cre02.g087551

Cre02.g087551


Description : Vesicle trafficking.target membrane tethering.GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes.VPS54 GARP-specific component


Gene families : OG0002922 (Archaeplastida) Phylogenetic Tree(s): OG0002922_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre02.g087551
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001408.17 No alias Vesicle trafficking.target membrane tethering.GARP/EARP... 0.01 Archaeplastida
Cpa|evm.model.tig00001408.18 No alias Vesicle trafficking.target membrane tethering.GARP/EARP... 0.01 Archaeplastida
GSVIVT01037972001 No alias Vesicle trafficking.target membrane tethering.GARP/EARP... 0.04 Archaeplastida
Gb_03763 No alias GARP-specific component VPS54 of GARP/EARP... 0.02 Archaeplastida
LOC_Os04g13470.1 No alias GARP-specific component VPS54 of GARP/EARP... 0.04 Archaeplastida
MA_418299g0010 No alias GARP-specific component VPS54 of GARP/EARP... 0.01 Archaeplastida
Mp5g09490.1 No alias GARP-specific component VPS54 of GARP/EARP... 0.03 Archaeplastida
Pp3c11_18680V3.1 No alias VPS54 0.03 Archaeplastida
Solyc02g030100.4.1 No alias Vacuolar protein sorting-associated protein 54,... 0.03 Archaeplastida
Solyc02g030110.2.1 No alias GARP-specific component VPS54 of GARP/EARP... 0.01 Archaeplastida
Zm00001e008702_P001 No alias GARP-specific component VPS54 of GARP/EARP... 0.05 Archaeplastida
Zm00001e040599_P001 No alias GARP-specific component VPS54 of GARP/EARP... 0.05 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0042147 retrograde transport, endosome to Golgi IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
CC GO:0030173 integral component of Golgi membrane IEP Neighborhood
CC GO:0031228 intrinsic component of Golgi membrane IEP Neighborhood
CC GO:0031300 intrinsic component of organelle membrane IEP Neighborhood
CC GO:0031301 integral component of organelle membrane IEP Neighborhood
BP GO:0031324 negative regulation of cellular metabolic process IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051253 negative regulation of RNA metabolic process IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR012501 Vps54_C 916 1027
IPR019515 VPS54_N 281 403
No external refs found!