AMTR_s00047p00181740 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00047.105

Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0002159 (SeedPlants) Phylogenetic Tree(s): OG_06_0002159_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00047p00181740
Cluster	HCCA: Cluster_230

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00071p00198970	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00089p00081270	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
AT1G17310	No alias	MADS-box transcription factor family protein	0.03	Archaeplastida
AT1G71692	XAL1, AGL12	AGAMOUS-like 12	0.02	Archaeplastida
AT2G42830	SHP2, AGL5	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT2G45650	AGL6	AGAMOUS-like 6	0.03	Archaeplastida
AT3G02310	AGL4, SEP2	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
AT3G58780	AGL1, SHP1	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
AT4G09960	STK, AGL11	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
AT4G11880	AGL14	AGAMOUS-like 14	0.04	Archaeplastida
AT4G18960	AG	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT5G15800	AGL2, SEP1	K-box region and MADS-box transcription factor family protein	0.05	Archaeplastida
AT5G23260	AGL32, TT16, ABS	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
GSVIVT01008140001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01012250001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01018450001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.05	Archaeplastida
GSVIVT01019883001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01025945001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01027577001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01035477001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01037031001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
Gb_03068	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Gb_31417	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os02g52340.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os03g11614.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os03g54160.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os03g54170.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os06g01890.1	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
LOC_Os06g06750.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_20467g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_20467g0020	No alias	MADS-box transcription factor 6 OS=Oryza sativa subsp....	0.03	Archaeplastida
Pp3c16_19170V3.1	No alias	AGAMOUS-like 61	0.02	Archaeplastida
Pp3c17_13070V3.1	No alias	AGAMOUS-like 66	0.03	Archaeplastida
Pp3c25_6940V3.1	No alias	AGAMOUS-like 62	0.02	Archaeplastida
Smo121275	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
Smo79393	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
Solyc01g093960.3.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc02g065730.2.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc02g084630.3.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc02g091550.2.1	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
Solyc04g081000.3.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc05g012020.4.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc06g069430.3.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc11g005120.3.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Solyc11g032100.2.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e005705_P004	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e012026_P002	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e018993_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e021861_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e026007_P004	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e030373_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003855	3-dehydroquinate dehydratase activity	IEP	Neighborhood
MF	GO:0004764	shikimate 3-dehydrogenase (NADP+) activity	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006820	anion transport	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
BP	GO:0008272	sulfate transport	IEP	Neighborhood
MF	GO:0008509	anion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015116	sulfate transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015698	inorganic anion transport	IEP	Neighborhood
MF	GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	IEP	Neighborhood
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Neighborhood
MF	GO:0016836	hydro-lyase activity	IEP	Neighborhood
MF	GO:0016887	ATPase activity	IEP	Neighborhood
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Neighborhood
MF	GO:0051213	dioxygenase activity	IEP	Neighborhood
BP	GO:0072348	sulfur compound transport	IEP	Neighborhood
MF	GO:1901682	sulfur compound transmembrane transporter activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	9	59
IPR002487	TF_Kbox	78	172

External Links

No external refs found!

AMTR_s00047p00181740 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation