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  5. Cre03.g174500

Cre03.g174500


Description : Homeobox-DDT domain protein RLT1 OS=Arabidopsis thaliana


Gene families : OG0001780 (Archaeplastida) Phylogenetic Tree(s): OG0001780_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre03.g174500
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00058p00137050 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
AT1G28420 HB-1 homeobox-1 0.02 Archaeplastida
AT5G44180 No alias Homeodomain-like transcriptional regulator 0.04 Archaeplastida
GSVIVT01020605001 No alias RNA biosynthesis.transcriptional activation.HB... 0.05 Archaeplastida
GSVIVT01021113001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
LOC_Os07g42750.1 No alias Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_2434g0010 No alias HOX-like transcription factor 0.03 Archaeplastida
Mp1g04480.1 No alias HOX-like transcription factor 0.01 Archaeplastida
Pp3c16_15110V3.1 No alias homeobox-1 0.03 Archaeplastida
Smo447019 No alias RNA biosynthesis.transcriptional activation.HB... 0.01 Archaeplastida
Solyc02g077660.3.1 No alias HOX-like transcription factor 0.05 Archaeplastida
Solyc07g053610.3.1 No alias HOX-like transcription factor 0.02 Archaeplastida
Zm00001e020198_P001 No alias HOX-like transcription factor 0.04 Archaeplastida
Zm00001e020199_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e020201_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e020202_P002 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e026524_P003 No alias HOX-like transcription factor 0.02 Archaeplastida
Zm00001e028032_P001 No alias HOX-like transcription factor 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003714 transcription corepressor activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0003989 acetyl-CoA carboxylase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016421 CoA carboxylase activity IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR007759 HB1/Asxl_HTH 826 893
IPR001356 Homeobox_dom 16 70
IPR028941 WHIM2_dom 1261 1333
IPR028942 WHIM1_dom 1075 1114
IPR018501 DDT_dom 658 707
No external refs found!