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  5. Cre03.g182950

Cre03.g182950


Description : RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Prp43 RNA helicase


Gene families : OG0000159 (Archaeplastida) Phylogenetic Tree(s): OG0000159_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre03.g182950
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
AT5G13010 EMB3011 RNA helicase family protein 0.02 Archaeplastida
Cre12.g520150 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
Gb_14269 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
LOC_Os06g23530.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
MA_277016g0010 No alias RNA helicase (Prp2) 0.01 Archaeplastida
MA_5383g0010 No alias RNA helicase (Prp16) 0.01 Archaeplastida
MA_8723931g0010 No alias RNA helicase (Prp16) 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006817 phosphate ion transport IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 254 385
IPR011709 DUF1605 598 674
IPR003593 AAA+_ATPase 63 205
IPR007502 Helicase-assoc_dom 448 536
No external refs found!