Cre03.g183950


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum


Gene families : OG0000054 (Archaeplastida) Phylogenetic Tree(s): OG0000054_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre03.g183950
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
ChrSy.fgenesh.mRNA.7 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.01 Archaeplastida
ChrUn.fgenesh.mRNA.36 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_00282 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.01 Archaeplastida
Gb_00777 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_03181 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_05895 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.03 Archaeplastida
Gb_05914 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.04 Archaeplastida
Gb_10172 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_14369 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_17625 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_18985 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_18989 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_22530 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_23035 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.04 Archaeplastida
Gb_23452 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_25800 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.02 Archaeplastida
Gb_26797 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_28556 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_29064 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida
Gb_29290 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_29932 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida
Gb_30477 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_30542 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida
Gb_30851 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_31929 No alias Uncharacterized mitochondrial protein AtMg00820... 0.02 Archaeplastida
Gb_38369 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Pp3c3_31930V3.1 No alias No annotation 0.02 Archaeplastida
Pp3c4_7430V3.1 No alias cysteine-rich RLK (RECEPTOR-like protein kinase) 8 0.02 Archaeplastida
Solyc06g150112.1.1 No alias No annotation 0.06 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0006873 cellular ion homeostasis IEP Neighborhood
BP GO:0006875 cellular metal ion homeostasis IEP Neighborhood
BP GO:0006879 cellular iron ion homeostasis IEP Neighborhood
MF GO:0008199 ferric iron binding IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
BP GO:0030003 cellular cation homeostasis IEP Neighborhood
BP GO:0046916 cellular transition metal ion homeostasis IEP Neighborhood
BP GO:0048878 chemical homeostasis IEP Neighborhood
BP GO:0050801 ion homeostasis IEP Neighborhood
BP GO:0055065 metal ion homeostasis IEP Neighborhood
BP GO:0055072 iron ion homeostasis IEP Neighborhood
BP GO:0055076 transition metal ion homeostasis IEP Neighborhood
BP GO:0055080 cation homeostasis IEP Neighborhood
BP GO:0055082 cellular chemical homeostasis IEP Neighborhood
BP GO:0098771 inorganic ion homeostasis IEP Neighborhood
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 767 886
IPR001584 Integrase_cat-core 1871 1990
IPR013103 RVT_2 2643 2774
IPR013103 RVT_2 2534 2609
No external refs found!