1. Home
  2. Species
  3. Chlamydomonas reinhardtii
  4. Sequence
  5. Cre03.g189605

Cre03.g189605


Description : RNA biosynthesis.RNA polymerase II-dependent transcription.PAF1C transcription initiation and elongation complex.VIP6/CTR9 component


Gene families : OG0002678 (Archaeplastida) Phylogenetic Tree(s): OG0002678_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre03.g189605
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00223790 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
AMTR_s00024p00227830 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.01 Archaeplastida
GSVIVT01015096001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
Gb_17412 No alias component VIP6/CTR9 of PAF1C transcription initiation... 0.03 Archaeplastida
LOC_Os07g29360.1 No alias component VIP6/CTR9 of PAF1C transcription initiation... 0.02 Archaeplastida
Mp5g24200.1 No alias component VIP6/CTR9 of PAF1C transcription initiation... 0.03 Archaeplastida
Pp3c3_17140V3.1 No alias binding 0.03 Archaeplastida
Smo149863 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.01 Archaeplastida
Solyc07g041510.3.1 No alias component VIP6/CTR9 of PAF1C transcription initiation... 0.03 Archaeplastida
Solyc07g041550.2.1 No alias component VIP6/CTR9 of PAF1C transcription initiation... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
CC GO:0000439 transcription factor TFIIH core complex IEP Neighborhood
MF GO:0001671 ATPase activator activity IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003714 transcription corepressor activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
CC GO:0035658 Mon1-Ccz1 complex IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044440 endosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
MF GO:0060590 ATPase regulator activity IEP Neighborhood
MF GO:0070403 NAD+ binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
InterPro domains Description Start Stop
IPR019734 TPR_repeat 323 354
No external refs found!