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  5. AMTR_s00048p00162020

AMTR_s00048p00162020 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00048.115

Description : Protein trichome birefringence OS=Arabidopsis thaliana


Gene families : OG0000059 (Archaeplastida) Phylogenetic Tree(s): OG0000059_tree ,
OG_05_0000507 (LandPlants) Phylogenetic Tree(s): OG_05_0000507_tree ,
OG_06_0000491 (SeedPlants) Phylogenetic Tree(s): OG_06_0000491_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00048p00162020
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01014107001 No alias Protein trichome birefringence-like 41 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01020678001 No alias Protein trichome birefringence-like 39 OS=Arabidopsis thaliana 0.03 Archaeplastida
MA_9190158g0010 No alias xylan O-acetyltransferase (XOAT) 0.04 Archaeplastida
Solyc07g062210.4.1 No alias Protein trichome birefringence-like 37 OS=Arabidopsis... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0007275 multicellular organism development IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
BP GO:0051258 protein polymerization IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
InterPro domains Description Start Stop
IPR025846 PMR5_N_dom 178 231
IPR026057 PC-Esterase 233 518
No external refs found!