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  5. AMTR_s00048p00190950

AMTR_s00048p00190950 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00048.148

No description available


Gene families : OG0002070 (Archaeplastida) Phylogenetic Tree(s): OG0002070_tree ,
OG_05_0001361 (LandPlants) Phylogenetic Tree(s): OG_05_0001361_tree ,
OG_06_0004009 (SeedPlants) Phylogenetic Tree(s): OG_06_0004009_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00048p00190950
Cluster HCCA: Cluster_242

Target Alias Description ECC score Gene Family Method Actions
LOC_Os06g02440.1 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
CC GO:0005777 peroxisome IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006621 protein retention in ER lumen IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016881 acid-amino acid ligase activity IEP Neighborhood
BP GO:0019295 coenzyme M biosynthetic process IEP Neighborhood
BP GO:0019296 coenzyme M metabolic process IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
BP GO:0032507 maintenance of protein location in cell IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Neighborhood
BP GO:0042255 ribosome assembly IEP Neighborhood
BP GO:0042256 mature ribosome assembly IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
CC GO:0042579 microbody IEP Neighborhood
MF GO:0043021 ribonucleoprotein complex binding IEP Neighborhood
MF GO:0043022 ribosome binding IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0045185 maintenance of protein location IEP Neighborhood
MF GO:0046923 ER retention sequence binding IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0051651 maintenance of location in cell IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072595 maintenance of protein localization in organelle IEP Neighborhood
InterPro domains Description Start Stop
IPR009606 DUF1218 57 152
No external refs found!