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  5. AMTR_s00048p00233710

AMTR_s00048p00233710 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00048.233

No description available


Gene families : OG0008275 (Archaeplastida) Phylogenetic Tree(s): OG0008275_tree ,
OG_05_0007718 (LandPlants) Phylogenetic Tree(s): OG_05_0007718_tree ,
OG_06_0012020 (SeedPlants) Phylogenetic Tree(s): OG_06_0012020_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00048p00233710
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01019298001 No alias No description available 0.08 Archaeplastida
MA_140403g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
MA_169132g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
Mp5g13240.1 No alias no hits & (original description: none) 0.08 Archaeplastida
Pp3c7_26820V3.1 No alias No annotation 0.02 Archaeplastida
Solyc01g081430.4.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e002523_P001 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Neighborhood
CC GO:0000228 nuclear chromosome IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0004181 metallocarboxypeptidase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004673 protein histidine kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
MF GO:0008235 metalloexopeptidase activity IEP Neighborhood
MF GO:0008381 mechanosensitive ion channel activity IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Neighborhood
MF GO:0016832 aldehyde-lyase activity IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!