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  5. Cre05.g238374

Cre05.g238374


Description : ATP-dependent RNA helicase DEAH11, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000316 (Archaeplastida) Phylogenetic Tree(s): OG0000316_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre05.g238374
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AT2G25360 No alias RING/U-box superfamily protein 0.02 Archaeplastida
GSVIVT01016055001 No alias ATP-dependent RNA helicase DEAH12, chloroplastic... 0.01 Archaeplastida
GSVIVT01026257001 No alias Probable E3 ubiquitin-protein ligase ARI9 OS=Arabidopsis thaliana 0.02 Archaeplastida
LOC_Os12g43560.1 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.02 Archaeplastida
MA_179230g0010 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.01 Archaeplastida
MA_6751482g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc03g005970.4.1 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
InterPro domains Description Start Stop
IPR002867 IBR_dom 496 544
IPR002867 IBR_dom 574 614
IPR018957 Znf_C3HC4_RING-type 410 446
No external refs found!