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  5. Cre06.g251350

Cre06.g251350


Description : Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana


Gene families : OG0002482 (Archaeplastida) Phylogenetic Tree(s): OG0002482_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre06.g251350
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00138p00023960 evm_27.TU.AmTr_v1... Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana 0.01 Archaeplastida
GSVIVT01009478001 No alias Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana 0.01 Archaeplastida
GSVIVT01014098001 No alias Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana 0.02 Archaeplastida
Gb_10613 No alias pre-40S ribosomal subunit assembly factor (RID3) 0.02 Archaeplastida
LOC_Os07g22534.1 No alias pre-40S ribosomal subunit assembly factor (RID3) 0.03 Archaeplastida
Mp7g09900.1 No alias pre-40S ribosomal subunit assembly factor (RID3) 0.01 Archaeplastida
Pp3c18_8470V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.05 Archaeplastida
Zm00001e032455_P007 No alias pre-40S ribosomal subunit assembly factor (RID3) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005666 RNA polymerase III complex IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006383 transcription by RNA polymerase III IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 300 357
IPR001680 WD40_repeat 78 103
No external refs found!