Cre06.g268250

Description : Chromatin organisation.histones.H2B-type histone

Gene families : OG0000186 (Archaeplastida) Phylogenetic Tree(s): OG0000186_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre06.g268250
Cluster	HCCA: Cluster_40

Target	Alias	Description	ECC score	Gene Family Method
AT3G46030	HTB11	Histone superfamily protein	0.01	Archaeplastida
GSVIVT01016164001	No alias	Chromatin organisation.histones.H2B-type histone	0.02	Archaeplastida
GSVIVT01025021001	No alias	Chromatin organisation.histones.H2B-type histone	0.01	Archaeplastida
GSVIVT01025025001	No alias	Chromatin organisation.histones.H2B-type histone	0.01	Archaeplastida
Gb_26315	No alias	histone (H2B)	0.01	Archaeplastida
LOC_Os01g05630.1	No alias	histone (H2B)	0.01	Archaeplastida
LOC_Os03g17084.1	No alias	histone (H2B)	0.01	Archaeplastida
LOC_Os05g49860.1	No alias	histone (H2B)	0.01	Archaeplastida
LOC_Os08g38300.1	No alias	histone (H2B)	0.01	Archaeplastida
MA_10435143g0010	No alias	histone (H2B)	0.01	Archaeplastida
MA_10435143g0020	No alias	histone (H2B)	0.01	Archaeplastida
MA_17795g0010	No alias	histone (H2B)	0.02	Archaeplastida
Mp6g04070.1	No alias	histone (H2B)	0.01	Archaeplastida
Pp3c12_7610V3.1	No alias	Histone superfamily protein	0.02	Archaeplastida
Pp3c17_15780V3.1	No alias	Histone superfamily protein	0.01	Archaeplastida
Solyc02g038690.1.1	No alias	histone (H2B)	0.01	Archaeplastida
Solyc06g074790.2.1	No alias	histone (H2B)	0.01	Archaeplastida
Solyc11g007920.1.1	No alias	histone (H2B)	0.01	Archaeplastida
Solyc11g007930.1.1	No alias	histone (H2B)	0.01	Archaeplastida
Solyc11g066430.2.1	No alias	histone (H2B)	0.01	Archaeplastida
Zm00001e004028_P001	No alias	histone (H2B)	0.01	Archaeplastida
Zm00001e016882_P001	No alias	histone (H2B)	0.01	Archaeplastida
Zm00001e020484_P002	No alias	histone (H2B)	0.01	Archaeplastida
Zm00001e023342_P001	No alias	histone (H2B)	0.02	Archaeplastida
Zm00001e027803_P001	No alias	histone (H2B)	0.01	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003847	1-alkyl-2-acetylglycerophosphocholine esterase activity	IEP	Neighborhood
MF	GO:0004427	inorganic diphosphatase activity	IEP	Neighborhood
BP	GO:0006298	mismatch repair	IEP	Neighborhood
BP	GO:0016042	lipid catabolic process	IEP	Neighborhood
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	Neighborhood
MF	GO:0016780	phosphotransferase activity, for other substituted phosphate groups	IEP	Neighborhood
MF	GO:0030983	mismatched DNA binding	IEP	Neighborhood
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	6	129

External Links

No external refs found!

Cre06.g268250

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation