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Description : 5-3 exoribonuclease 3 OS=Arabidopsis thaliana
Gene families : OG0000811 (Archaeplastida) Phylogenetic Tree(s): OG0000811_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cre06.g280050 | |
| Cluster | HCCA: Cluster_74 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00000241.176 | No alias | 5-3 exoribonuclease 3 OS=Arabidopsis thaliana | 0.01 | Archaeplastida | |
| Gb_03499 | No alias | 5-3 exoribonuclease 3 OS=Arabidopsis thaliana... | 0.01 | Archaeplastida | |
| LOC_Os03g58060.1 | No alias | EBF-modulating exoribonuclease (EIN5/XRN4).... | 0.01 | Archaeplastida | |
| MA_8833695g0010 | No alias | no hits & (original description: none) | 0.01 | Archaeplastida | |
| Mp3g08820.1 | No alias | exoribonuclease (RAT1/XRN2) | 0.02 | Archaeplastida | |
| Pp3c14_10280V3.1 | No alias | 5\-3\ exoribonuclease 3 | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| MF | GO:0004527 | exonuclease activity | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0001882 | nucleoside binding | IEP | Neighborhood |
| MF | GO:0001883 | purine nucleoside binding | IEP | Neighborhood |
| MF | GO:0004788 | thiamine diphosphokinase activity | IEP | Neighborhood |
| MF | GO:0005096 | GTPase activator activity | IEP | Neighborhood |
| MF | GO:0005525 | GTP binding | IEP | Neighborhood |
| BP | GO:0006289 | nucleotide-excision repair | IEP | Neighborhood |
| BP | GO:0006914 | autophagy | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Neighborhood |
| BP | GO:0009229 | thiamine diphosphate biosynthetic process | IEP | Neighborhood |
| BP | GO:0009314 | response to radiation | IEP | Neighborhood |
| BP | GO:0009411 | response to UV | IEP | Neighborhood |
| BP | GO:0009416 | response to light stimulus | IEP | Neighborhood |
| BP | GO:0009628 | response to abiotic stimulus | IEP | Neighborhood |
| MF | GO:0016778 | diphosphotransferase activity | IEP | Neighborhood |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | Neighborhood |
| MF | GO:0030695 | GTPase regulator activity | IEP | Neighborhood |
| MF | GO:0032549 | ribonucleoside binding | IEP | Neighborhood |
| MF | GO:0032550 | purine ribonucleoside binding | IEP | Neighborhood |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Neighborhood |
| BP | GO:0042357 | thiamine diphosphate metabolic process | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| BP | GO:0044272 | sulfur compound biosynthetic process | IEP | Neighborhood |
| MF | GO:0046914 | transition metal ion binding | IEP | Neighborhood |
| CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | Neighborhood |
| BP | GO:0061919 | process utilizing autophagic mechanism | IEP | Neighborhood |
| BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | Neighborhood |
| CC | GO:1902554 | serine/threonine protein kinase complex | IEP | Neighborhood |
| CC | GO:1902911 | protein kinase complex | IEP | Neighborhood |
| CC | GO:1990316 | Atg1/ULK1 kinase complex | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR004859 | Put_53exo | 1 | 225 |
| No external refs found! |