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  5. Cre06.g282500

Cre06.g282500


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL23a component


Gene families : OG0002506 (Archaeplastida) Phylogenetic Tree(s): OG0002506_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre06.g282500
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00069970 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 Archaeplastida
AMTR_s00029p00132520 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
AT2G39460 RPL23A, RPL23AA, ATRPL23A ribosomal protein L23AA 0.37 Archaeplastida
AT3G55280 RPL23AB ribosomal protein L23AB 0.26 Archaeplastida
Cpa|evm.model.tig00000037.39 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.27 Archaeplastida
GSVIVT01025041001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 Archaeplastida
GSVIVT01025606001 No alias 60S ribosomal protein L23a-1 OS=Arabidopsis thaliana 0.08 Archaeplastida
LOC_Os01g24690.1 No alias component RPL23a of LSU proteome component 0.14 Archaeplastida
LOC_Os04g42270.2 No alias component RPL23a of LSU proteome component 0.21 Archaeplastida
MA_10430928g0010 No alias component RPL23a of LSU proteome component 0.26 Archaeplastida
MA_10436962g0020 No alias component RPL23a of LSU proteome component 0.06 Archaeplastida
Mp2g00570.1 No alias component RPL23a of LSU proteome component 0.38 Archaeplastida
Pp3c12_19360V3.1 No alias ribosomal protein L23AB 0.32 Archaeplastida
Pp3c13_15920V3.1 No alias ribosomal protein L23AB 0.23 Archaeplastida
Pp3c3_21160V3.1 No alias ribosomal protein L23AB 0.12 Archaeplastida
Pp3c4_8620V3.1 No alias ribosomal protein L23AB 0.39 Archaeplastida
Smo271663 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 Archaeplastida
Solyc09g005720.3.1 No alias component RPL23a of LSU proteome component 0.18 Archaeplastida
Solyc10g084610.3.1 No alias component RPL23a of LSU proteome component 0.03 Archaeplastida
Solyc10g086330.2.1 No alias component RPL23a of LSU proteome component 0.16 Archaeplastida
Zm00001e007662_P001 No alias component RPL23a of LSU proteome component 0.14 Archaeplastida
Zm00001e031062_P001 No alias component RPL23a of LSU proteome component 0.05 Archaeplastida
Zm00001e041164_P001 No alias component RPL23a of LSU proteome component 0.19 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
CC GO:0005743 mitochondrial inner membrane IEP Neighborhood
CC GO:0005747 mitochondrial respiratory chain complex I IEP Neighborhood
CC GO:0005750 mitochondrial respiratory chain complex III IEP Neighborhood
BP GO:0006091 generation of precursor metabolites and energy IEP Neighborhood
BP GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019866 organelle inner membrane IEP Neighborhood
BP GO:0022900 electron transport chain IEP Neighborhood
BP GO:0022904 respiratory electron transport chain IEP Neighborhood
CC GO:0030964 NADH dehydrogenase complex IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
CC GO:0045271 respiratory chain complex I IEP Neighborhood
CC GO:0045275 respiratory chain complex III IEP Neighborhood
CC GO:0070069 cytochrome complex IEP Neighborhood
CC GO:0070469 respiratory chain IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
CC GO:0098803 respiratory chain complex IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR005633 Ribosomal_L23/L25_N 9 57
IPR013025 Ribosomal_L25/23 67 126
No external refs found!