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  5. Cre06.g282600

Cre06.g282600


Description : DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana


Gene families : OG0000482 (Archaeplastida) Phylogenetic Tree(s): OG0000482_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre06.g282600
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00225030 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.04 Archaeplastida
AMTR_s00002p00261540 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... 0.01 Archaeplastida
AMTR_s00007p00266810 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00062p00159540 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT2G40700 No alias P-loop containing nucleoside triphosphate hydrolases... 0.08 Archaeplastida
AT3G18600 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Archaeplastida
AT5G05450 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Archaeplastida
AT5G65900 No alias DEA(D/H)-box RNA helicase family protein 0.02 Archaeplastida
Cpa|evm.model.tig00000441.11 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.01 Archaeplastida
Cpa|evm.model.tig00000615.43 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana 0.04 Archaeplastida
Cpa|evm.model.tig00020684.38 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... 0.01 Archaeplastida
GSVIVT01008218001 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.03 Archaeplastida
GSVIVT01015034001 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01032750001 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01037636001 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana 0.04 Archaeplastida
Gb_12810 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... 0.04 Archaeplastida
Gb_16157 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.03 Archaeplastida
LOC_Os01g07080.1 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... 0.03 Archaeplastida
LOC_Os03g58810.1 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.03 Archaeplastida
LOC_Os05g01990.1 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.03 Archaeplastida
LOC_Os07g33340.1 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Oryza sativa... 0.04 Archaeplastida
MA_10334041g0020 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis... 0.01 Archaeplastida
MA_165342g0010 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis... 0.01 Archaeplastida
Mp6g05260.1 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.07 Archaeplastida
Mp7g12890.1 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.07 Archaeplastida
Mp8g10290.1 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis... 0.05 Archaeplastida
Pp3c11_510V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Archaeplastida
Pp3c17_13450V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Archaeplastida
Pp3c1_22540V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Archaeplastida
Pp3c4_14810V3.1 No alias DEA(D/H)-box RNA helicase family protein 0.07 Archaeplastida
Smo104808 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.01 Archaeplastida
Solyc02g078880.4.1 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis... 0.03 Archaeplastida
Solyc03g114370.4.1 No alias no hits & (original description: none) 0.07 Archaeplastida
Solyc07g064520.3.1 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis... 0.07 Archaeplastida
Zm00001e010480_P001 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Oryza sativa... 0.07 Archaeplastida
Zm00001e011842_P001 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.05 Archaeplastida
Zm00001e016823_P002 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... 0.03 Archaeplastida
Zm00001e027024_P001 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Neighborhood
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
CC GO:0034457 Mpp10 complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0043527 tRNA methyltransferase complex IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044452 nucleolar part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 3 93
IPR025313 DUF4217 435 492
IPR001650 Helicase_C 198 313
No external refs found!