Cre07.g322176


Description : DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis thaliana


Gene families : OG0003993 (Archaeplastida) Phylogenetic Tree(s): OG0003993_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre07.g322176
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00186p00032060 evm_27.TU.AmTr_v1... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.01 Archaeplastida
AT1G29940 NRPA2 nuclear RNA polymerase A2 0.15 Archaeplastida
Cpa|evm.model.tig00021348.38 No alias DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis thaliana 0.17 Archaeplastida
GSVIVT01036642001 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.07 Archaeplastida
Gb_32298 No alias subunit 2 of Pol I RNA polymerase 0.05 Archaeplastida
LOC_Os10g35290.1 No alias subunit 2 of Pol I RNA polymerase 0.14 Archaeplastida
MA_10434720g0010 No alias DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis... 0.04 Archaeplastida
Mp3g15820.1 No alias subunit 2 of Pol I RNA polymerase 0.23 Archaeplastida
Pp3c5_14880V3.1 No alias nuclear RNA polymerase A2 0.16 Archaeplastida
Smo405033 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.1 Archaeplastida
Solyc01g086710.4.1 No alias subunit 2 of Pol I RNA polymerase 0.16 Archaeplastida
Zm00001e004480_P001 No alias subunit 2 of Pol I RNA polymerase 0.13 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
BP GO:0000469 cleavage involved in rRNA processing IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Neighborhood
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016778 diphosphotransferase activity IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0030490 maturation of SSU-rRNA IEP Neighborhood
MF GO:0030515 snoRNA binding IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030688 preribosome, small subunit precursor IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR007641 RNA_pol_Rpb2_7 933 1045
IPR007644 RNA_pol_bsu_protrusion 42 429
IPR009674 Rpa2_dom_4 594 670
IPR007120 DNA-dir_RNAP_su2_dom 761 930
IPR007642 RNA_pol_Rpb2_2 229 397
IPR007645 RNA_pol_Rpb2_3 481 545
No external refs found!