Cre07.g325738

Description : RNA biosynthesis.transcriptional activation.SBP transcription factor

Gene families : OG0000102 (Archaeplastida) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre07.g325738
Cluster	HCCA: Cluster_48

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00013p00150040	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.SBP...	0.01	Archaeplastida
AMTR_s00022p00106940	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.SBP...	0.02	Archaeplastida
AMTR_s00047p00197010	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.SBP...	0.02	Archaeplastida
AMTR_s00106p00142470	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.SBP...	0.01	Archaeplastida
GSVIVT01010496001	No alias	RNA biosynthesis.transcriptional activation.SBP...	0.02	Archaeplastida
LOC_Os06g49010.4	No alias	transcription factor (SBP)	0.02	Archaeplastida
MA_273100g0020	No alias	no hits & (original description: none)	0.03	Archaeplastida
Mp1g13640.1	No alias	transcription factor (SBP)	0.01	Archaeplastida
Solyc05g015840.3.1	No alias	transcription factor (SBP)	0.02	Archaeplastida
Solyc10g009080.4.1	No alias	no hits & (original description: none)	0.01	Archaeplastida
Zm00001e003571_P002	No alias	transcription factor (SBP)	0.02	Archaeplastida
Zm00001e037693_P001	No alias	transcription factor (SBP)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003909	DNA ligase activity	IEP	Neighborhood
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006310	DNA recombination	IEP	Neighborhood
BP	GO:0006629	lipid metabolic process	IEP	Neighborhood
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR004333	SBP_dom	101	174

External Links

No external refs found!